Wall clock time and date at job start Mon Mar 30 2020 01:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.45199 * 109.47438 * 239.99770 * 2 1 3 5 5 C 1.34227 * 117.00010 * 90.00057 * 4 2 1 6 6 O 1.20830 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00298 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47615 * 179.97438 * 7 5 4 9 9 C 1.76189 * 100.00435 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00115 * 0.02562 * 9 8 7 11 11 C 1.38794 * 120.00132 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00127 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46738 * 60.00544 * 13 11 9 15 15 H 1.48497 * 109.47336 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47132 * 300.00580 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.38388 * 120.00123 * 124.72128 * 17 2 1 19 19 N 1.32125 * 119.99753 * 179.78137 * 18 17 2 20 20 C 1.32156 * 119.99992 * 0.49887 * 19 18 17 21 21 C 1.38345 * 120.00006 * 359.73377 * 20 19 18 22 22 N 1.32119 * 120.00065 * 305.00154 * 17 2 1 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.08996 * 109.47636 * 300.00323 * 7 5 4 27 27 H 1.09002 * 109.47104 * 60.00357 * 7 5 4 28 28 H 0.97002 * 119.99805 * 180.02562 * 12 11 9 29 29 H 1.07998 * 119.99946 * 0.02923 * 18 17 2 30 30 H 1.08000 * 119.99659 * 179.71695 * 20 19 18 31 31 H 1.08000 * 119.99992 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2173 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 16 2.8890 0.6838 -4.8365 9 6 3.4713 -0.3136 -6.1670 10 1 3.6145 -1.3745 -6.0242 11 6 3.7451 0.2638 -7.3991 12 7 3.5702 1.5567 -7.5735 13 14 4.3632 -0.7936 -8.8096 14 1 3.3578 -1.8415 -9.1201 15 1 4.5779 0.0562 -10.0083 16 1 5.6446 -1.4363 -8.4218 17 6 2.0323 -0.7104 1.2305 18 6 2.9066 -1.7759 1.1059 19 7 3.3503 -2.3960 2.1850 20 6 2.9515 -2.0049 3.3828 21 6 2.0738 -0.9428 3.5070 22 7 1.6337 -0.3195 2.4280 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.6872 -1.0409 -3.3639 27 1 2.0089 -1.3369 -3.8774 28 1 3.7612 1.9601 -8.4347 29 1 3.2292 -2.0981 0.1269 30 1 3.3107 -2.5147 4.2645 31 1 1.7483 -0.6229 4.4859 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751165429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:22 Heat of formation + Delta-G solvation = -38.828400 kcal Electronic energy + Delta-G solvation = -17147.913736 eV Core-core repulsion = 14135.187101 eV Total energy + Delta-G solvation = -3012.726634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45996 -40.15993 -36.63809 -34.75418 -33.01042 -32.51091 -30.47424 -29.42160 -25.69624 -25.49210 -24.63976 -22.47292 -20.75932 -18.17313 -17.86424 -17.37250 -17.08360 -16.60074 -16.03970 -15.23959 -15.11405 -14.86691 -14.22998 -14.04794 -13.65536 -13.11113 -12.96648 -12.71080 -12.26689 -12.14205 -11.83006 -11.62056 -11.35314 -11.13168 -11.07841 -10.85273 -10.80004 -10.14480 -9.94425 -9.49070 -9.31727 -9.13087 -8.40544 -6.63892 -6.29666 -4.02972 0.46825 0.83834 2.36126 2.54385 3.18222 3.20636 3.25550 3.37855 3.39894 3.77980 4.06946 4.12966 4.19007 4.46132 4.79508 4.84492 4.93555 5.00584 5.06331 5.19417 5.28827 5.39762 5.64228 5.71727 5.74321 5.96490 6.02360 6.09523 6.54431 6.96768 7.47577 7.52773 8.03567 8.27604 9.15825 10.77741 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.041475 B = 0.003599 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.942009 B = 7778.677169 C = 8233.843704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.110 0.890 4 O -0.357 6.357 5 C 0.483 3.517 6 O -0.481 6.481 7 C -0.129 4.129 8 S -0.056 6.056 9 C -0.538 4.538 10 H 0.076 0.924 11 C 0.075 3.925 12 N -0.867 5.867 13 Si 0.922 3.078 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.273 1.273 17 C 0.082 3.918 18 C 0.073 3.927 19 N -0.436 5.436 20 C 0.043 3.957 21 C 0.052 3.948 22 N -0.430 5.430 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.270 0.730 29 H 0.180 0.820 30 H 0.170 0.830 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -6.666 19.434 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.085 3.915 3 H 0.127 0.873 4 O -0.275 6.275 5 C 0.324 3.676 6 O -0.366 6.366 7 C -0.277 4.277 8 S 0.170 5.830 9 C -0.686 4.686 10 H 0.094 0.906 11 C -0.134 4.134 12 N -0.502 5.502 13 Si 0.747 3.253 14 H -0.198 1.198 15 H -0.208 1.208 16 H -0.198 1.198 17 C -0.058 4.058 18 C -0.087 4.087 19 N -0.150 5.150 20 C -0.116 4.116 21 C -0.108 4.108 22 N -0.146 5.146 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.080 0.920 29 H 0.197 0.803 30 H 0.188 0.812 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.744 -5.024 19.373 20.361 hybrid contribution 0.631 -1.901 -0.771 2.146 sum -3.113 -6.924 18.602 20.091 Atomic orbital electron populations 1.22102 0.92074 1.03242 1.04071 1.20965 0.95249 0.96217 0.79090 0.87256 1.86493 1.77966 1.42886 1.20181 1.23367 0.74189 0.85943 0.84134 1.90680 1.46463 1.16210 1.83235 1.23322 1.04626 1.05969 0.93746 1.85435 1.86838 1.08532 1.02202 1.22801 1.51990 0.96465 0.97341 0.90571 1.24999 0.94879 0.95383 0.98182 1.69996 1.45294 1.10019 1.24913 0.86177 0.79340 0.79652 0.80082 1.19817 1.20775 1.19805 1.21842 0.95365 0.95248 0.93384 1.23728 0.93559 0.92316 0.99085 1.68560 1.20756 1.26898 0.98828 1.23843 0.95448 0.95718 0.96616 1.23746 0.95259 0.93656 0.98115 1.68020 1.21336 1.27267 0.98003 0.91737 0.89805 0.90737 0.87742 0.87694 0.91974 0.80293 0.81242 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.41 37.16 0.35 -1.49 16 2 C 0.14 1.87 3.06 -27.88 -0.09 1.79 16 3 H 0.11 1.56 7.16 -51.93 -0.37 1.19 16 4 O -0.36 -5.25 8.37 -39.25 -0.33 -5.58 16 5 C 0.48 8.71 7.95 36.00 0.29 8.99 16 6 O -0.48 -10.03 15.08 -18.75 -0.28 -10.31 16 7 C -0.13 -2.49 6.27 36.00 0.23 -2.27 16 8 S -0.06 -1.46 20.57 -107.50 -2.21 -3.68 16 9 C -0.54 -14.82 9.50 30.94 0.29 -14.52 16 10 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.08 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.47 13.22 55.49 0.73 -24.74 16 13 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 C 0.08 1.00 6.17 -82.41 -0.51 0.49 16 18 C 0.07 0.87 10.56 -17.37 -0.18 0.69 16 19 N -0.44 -5.01 10.50 -13.06 -0.14 -5.15 16 20 C 0.04 0.37 11.22 -17.37 -0.20 0.17 16 21 C 0.05 0.44 11.22 -17.37 -0.20 0.24 16 22 N -0.43 -4.85 10.06 -9.29 -0.09 -4.95 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.89 7.96 -51.93 -0.41 0.47 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 27 H 0.10 1.87 8.14 -51.91 -0.42 1.45 16 28 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.18 2.05 7.00 -52.49 -0.37 1.68 16 30 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -32.55 296.45 -6.22 -38.77 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -3.23 Total: -0.79 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.11 Total: -3.92 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.50 Total: -34.83 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.61 Total: -15.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.68 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.55 -6.22 -38.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751165429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.058 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds