Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 O 1.45199 * 109.47438 * 239.99770 * 2 1 3 5 5 C 1.34227 * 117.00010 * 90.00057 * 4 2 1 6 6 O 1.20830 * 119.99699 * 0.02562 * 5 4 2 7 7 C 1.50696 * 120.00298 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.47615 * 179.97438 * 7 5 4 9 9 C 1.76189 * 100.00435 * 180.02562 * 8 7 5 10 10 H 1.08002 * 120.00115 * 0.02562 * 9 8 7 11 11 C 1.38794 * 120.00132 * 179.97438 * 9 8 7 12 12 N 1.31627 * 120.00127 * 0.02562 * 11 9 8 13 13 Si 1.86808 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46738 * 60.00544 * 13 11 9 15 15 H 1.48497 * 109.47336 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47132 * 300.00580 * 13 11 9 17 17 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 18 18 C 1.38388 * 120.00123 * 124.72128 * 17 2 1 19 19 N 1.32125 * 119.99753 * 179.78137 * 18 17 2 20 20 C 1.32156 * 119.99992 * 0.49887 * 19 18 17 21 21 C 1.38345 * 120.00006 * 359.73377 * 20 19 18 22 22 N 1.32119 * 120.00065 * 305.00154 * 17 2 1 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.08996 * 109.47636 * 300.00323 * 7 5 4 27 27 H 1.09002 * 109.47104 * 60.00357 * 7 5 4 28 28 H 0.97002 * 119.99805 * 180.02562 * 12 11 9 29 29 H 1.07998 * 119.99946 * 0.02923 * 18 17 2 30 30 H 1.08000 * 119.99659 * 179.71695 * 20 19 18 31 31 H 1.08000 * 119.99992 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0141 -0.6845 -1.1855 5 6 2.2173 0.0639 -2.2811 6 8 1.9983 1.2518 -2.2503 7 6 2.7184 -0.5772 -3.5494 8 16 2.8890 0.6838 -4.8365 9 6 3.4713 -0.3136 -6.1670 10 1 3.6145 -1.3745 -6.0242 11 6 3.7451 0.2638 -7.3991 12 7 3.5702 1.5567 -7.5735 13 14 4.3632 -0.7936 -8.8096 14 1 3.3578 -1.8415 -9.1201 15 1 4.5779 0.0562 -10.0083 16 1 5.6446 -1.4363 -8.4218 17 6 2.0323 -0.7104 1.2305 18 6 2.9066 -1.7759 1.1059 19 7 3.3503 -2.3960 2.1850 20 6 2.9515 -2.0049 3.3828 21 6 2.0738 -0.9428 3.5070 22 7 1.6337 -0.3195 2.4280 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 3.6872 -1.0409 -3.3639 27 1 2.0089 -1.3369 -3.8774 28 1 3.7612 1.9601 -8.4347 29 1 3.2292 -2.0981 0.1269 30 1 3.3107 -2.5147 4.2645 31 1 1.7483 -0.6229 4.4859 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751165429.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -60.296693 kcal Electronic energy + Delta-G solvation = -17148.844671 eV Core-core repulsion = 14135.187101 eV Total energy + Delta-G solvation = -3013.657570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.33263 -41.46065 -37.97621 -35.62510 -34.60313 -33.96739 -31.55817 -30.75837 -27.70821 -26.48124 -25.42845 -23.58238 -22.01984 -19.96785 -19.03857 -18.37024 -18.24889 -17.55080 -17.37186 -16.88584 -16.39408 -16.09427 -15.85914 -15.08089 -14.86975 -14.54605 -14.24765 -13.89978 -13.62618 -13.23410 -13.13328 -12.86739 -12.67942 -12.65408 -12.55631 -12.34298 -11.97276 -11.80110 -11.66267 -11.13708 -10.37479 -10.28721 -10.10857 -8.72641 -8.36635 -6.16229 -0.29864 0.05666 0.90919 1.07530 1.40275 1.45586 1.53781 1.75155 2.24688 2.62202 2.85668 2.98630 3.22122 3.35758 3.44649 3.61100 3.75149 3.91120 3.94752 4.18970 4.30607 4.35101 4.45086 4.57961 4.62669 4.69767 5.03593 5.20507 5.36043 5.42082 6.18782 6.20198 6.60151 6.71779 7.05322 8.72262 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.041475 B = 0.003599 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.942009 B = 7778.677169 C = 8233.843704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.141 3.859 3 H 0.094 0.906 4 O -0.342 6.342 5 C 0.493 3.507 6 O -0.514 6.514 7 C -0.108 4.108 8 S -0.136 6.136 9 C -0.549 4.549 10 H 0.087 0.913 11 C 0.017 3.983 12 N -0.910 5.910 13 Si 0.998 3.002 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.262 1.262 17 C 0.066 3.934 18 C 0.057 3.943 19 N -0.459 5.459 20 C 0.053 3.947 21 C 0.061 3.939 22 N -0.447 5.447 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.272 0.728 29 H 0.175 0.825 30 H 0.211 0.789 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -8.696 21.164 23.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.084 3.916 3 H 0.112 0.888 4 O -0.259 6.259 5 C 0.335 3.665 6 O -0.401 6.401 7 C -0.257 4.257 8 S 0.091 5.909 9 C -0.697 4.697 10 H 0.105 0.895 11 C -0.188 4.188 12 N -0.546 5.546 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.205 1.205 16 H -0.186 1.186 17 C -0.073 4.073 18 C -0.101 4.101 19 N -0.173 5.173 20 C -0.107 4.107 21 C -0.100 4.100 22 N -0.164 5.164 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.081 0.919 29 H 0.192 0.808 30 H 0.228 0.772 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.581 -7.071 21.094 22.534 hybrid contribution 0.552 -1.316 -1.014 1.750 sum -3.029 -8.387 20.080 21.971 Atomic orbital electron populations 1.22060 0.90954 1.03758 1.04036 1.21083 0.96149 0.95537 0.78817 0.88800 1.86455 1.77485 1.42057 1.19928 1.23010 0.73530 0.85347 0.84576 1.90676 1.47984 1.17581 1.83859 1.23107 1.06488 1.03845 0.92219 1.85545 1.87178 1.12916 1.05253 1.23176 1.51767 0.96970 0.97782 0.89468 1.26098 0.94846 0.96689 1.01199 1.70155 1.46654 1.12112 1.25715 0.85004 0.79135 0.77771 0.76118 1.18618 1.20466 1.18644 1.21557 0.96531 0.95871 0.93342 1.23653 0.94171 0.92801 0.99495 1.68577 1.21518 1.27520 0.99728 1.24573 0.94178 0.95256 0.96730 1.24490 0.94027 0.92710 0.98765 1.68017 1.22035 1.28045 0.98285 0.90877 0.88532 0.92001 0.85705 0.85671 0.91864 0.80781 0.77223 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.41 71.98 0.68 -2.79 16 2 C 0.14 3.71 3.06 29.85 0.09 3.80 16 3 H 0.09 2.77 7.16 -2.39 -0.02 2.75 16 4 O -0.34 -10.00 8.37 -51.39 -0.43 -10.43 16 5 C 0.49 17.91 7.95 71.23 0.57 18.48 16 6 O -0.51 -22.03 15.08 21.95 0.33 -21.69 16 7 C -0.11 -4.16 6.27 71.23 0.45 -3.71 16 8 S -0.14 -7.22 20.57 -56.49 -1.16 -8.38 16 9 C -0.55 -30.36 9.50 67.95 0.65 -29.71 16 10 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 11 C 0.02 0.93 5.49 84.86 0.47 1.40 16 12 N -0.91 -54.51 13.22 21.65 0.29 -54.23 16 13 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 15 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 16 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 17 C 0.07 1.55 6.17 42.55 0.26 1.82 16 18 C 0.06 1.32 10.56 84.68 0.89 2.21 16 19 N -0.46 -9.70 10.50 -195.22 -2.05 -11.75 16 20 C 0.05 0.72 11.22 84.67 0.95 1.67 16 21 C 0.06 0.81 11.22 84.67 0.95 1.76 16 22 N -0.45 -9.25 10.06 -183.29 -1.84 -11.09 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.10 1.96 7.96 -2.39 -0.02 1.95 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.12 4.30 8.14 -2.40 -0.02 4.28 16 27 H 0.13 4.32 8.14 -2.39 -0.02 4.30 16 28 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 29 H 0.18 3.99 7.00 -2.91 -0.02 3.97 16 30 H 0.21 0.98 8.06 -2.91 -0.02 0.95 16 31 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -72.09 296.45 4.26 -67.83 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.15 Total: 10.25 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 5.95 Total: -5.08 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -3.61 Total: -77.06 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.10 Total: -32.13 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -7.22 SS G_CDS: -1.16 Total: -8.38 kcal Total: -72.09 4.26 -67.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751165429.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.537 kcal (2) G-P(sol) polarization free energy of solvation -72.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds