Wall clock time and date at job start Mon Mar 30 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48503 * 109.47155 * 240.00536 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 120.00539 * 3 2 1 7 7 C 1.37879 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00258 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47055 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.45202 * 109.46867 * 180.02562 * 11 10 9 13 13 C 1.34768 * 116.99635 * 179.97438 * 12 11 10 14 14 O 1.21537 * 119.99962 * 0.02562 * 13 12 11 15 15 C 1.47224 * 120.00056 * 179.97438 * 13 12 11 16 16 C 1.36852 * 122.90826 * 0.03360 * 15 13 12 17 17 S 1.70559 * 110.74909 * 179.97438 * 16 15 13 18 18 C 1.75692 * 91.92689 * 359.97438 * 17 16 15 19 19 C 1.41448 * 125.12013 * 180.02562 * 18 17 16 20 20 O 1.21418 * 120.00013 * 179.97438 * 19 18 17 21 21 C 1.36365 * 109.75352 * 359.73150 * 18 17 16 22 22 H 0.96999 * 119.99910 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47197 * 60.00848 * 9 7 2 24 24 H 1.09001 * 109.47328 * 300.00375 * 9 7 2 25 25 H 1.09001 * 109.47502 * 60.00512 * 10 9 7 26 26 H 1.09001 * 109.47289 * 300.00308 * 10 9 7 27 27 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 28 28 H 1.08993 * 109.46955 * 60.00011 * 11 10 9 29 29 H 1.08002 * 124.62258 * 0.02562 * 16 15 13 30 30 H 1.07999 * 120.00188 * 359.97438 * 19 18 17 31 31 H 1.08005 * 123.30459 * 180.24498 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 8 2.4236 -6.0908 -0.0006 13 6 1.9085 -7.3361 -0.0005 14 8 0.7036 -7.4953 -0.0014 15 6 2.8052 -8.5037 -0.0004 16 6 4.1693 -8.3936 0.0002 17 16 4.9000 -9.9347 0.0007 18 6 3.3387 -10.7403 0.0009 19 6 3.1460 -12.1416 0.0019 20 8 2.0216 -12.5999 0.0024 21 6 2.3406 -9.8112 0.0065 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5568 -0.8903 24 1 0.6245 -2.5571 0.8896 25 1 2.8717 -3.6045 0.8895 26 1 2.8718 -3.6044 -0.8905 27 1 0.8531 -5.0451 0.8886 28 1 0.8537 -5.0446 -0.8913 29 1 4.7094 -7.4583 0.0011 30 1 3.9991 -12.8040 0.0022 31 1 1.2915 -10.0677 0.0116 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754565974.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:56 Heat of formation + Delta-G solvation = -122.835854 kcal Electronic energy + Delta-G solvation = -16650.174629 eV Core-core repulsion = 13601.512407 eV Total energy + Delta-G solvation = -3048.662222 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66215 -40.36141 -38.46934 -37.54472 -35.95247 -33.71985 -31.77602 -29.10324 -27.10413 -26.21056 -24.64883 -22.20336 -21.88177 -20.39447 -19.12703 -18.86455 -18.44190 -17.74570 -17.34255 -16.52892 -16.48698 -16.02978 -15.87377 -15.48395 -14.89844 -14.22020 -14.12411 -14.05579 -13.91117 -13.69130 -13.59915 -12.80560 -12.56108 -12.50625 -12.34649 -12.11296 -11.83102 -11.48456 -11.45281 -11.27546 -11.03250 -10.57430 -10.13570 -9.75203 -8.22207 -6.34200 -0.93511 0.14003 0.30477 0.57513 1.41248 1.44874 1.51979 1.56215 1.56454 2.01396 2.41199 3.11765 3.40182 3.64960 3.89536 3.96643 4.02462 4.07531 4.20696 4.37832 4.62792 4.77616 4.79114 4.82311 5.04611 5.05794 5.32384 5.48129 5.62205 5.79087 6.17600 6.41325 6.56763 6.81907 7.35543 8.89966 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.049199 B = 0.002881 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.975116 B = 9717.357476 C =10260.581904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.970 3.030 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.091 4.091 11 C 0.078 3.922 12 O -0.347 6.347 13 C 0.518 3.482 14 O -0.546 6.546 15 C -0.189 4.189 16 C -0.167 4.167 17 S 0.423 5.577 18 C -0.359 4.359 19 C 0.415 3.585 20 O -0.508 6.508 21 C -0.019 4.019 22 H 0.264 0.736 23 H -0.004 1.004 24 H -0.005 1.005 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.206 0.794 30 H 0.164 0.836 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.577 -23.010 0.012 28.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.012 4.012 10 C -0.129 4.129 11 C 0.004 3.996 12 O -0.263 6.263 13 C 0.363 3.637 14 O -0.438 6.438 15 C -0.203 4.203 16 C -0.307 4.307 17 S 0.692 5.308 18 C -0.477 4.477 19 C 0.277 3.723 20 O -0.385 6.385 21 C -0.050 4.050 22 H 0.073 0.927 23 H 0.014 0.986 24 H 0.014 0.986 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.223 0.777 30 H 0.180 0.820 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 17.012 -23.665 0.012 29.146 hybrid contribution -2.262 1.963 0.002 2.995 sum 14.750 -21.702 0.014 26.241 Atomic orbital electron populations 1.70102 1.07981 1.28025 1.51415 1.26041 0.95777 1.03634 0.94578 0.85426 0.78172 0.77648 0.79361 1.18920 1.21082 1.18928 1.21599 0.93827 0.91750 1.50951 0.91406 1.18939 0.94319 0.92585 0.95399 1.21454 0.98693 0.89878 1.02841 1.23199 0.91024 0.83496 1.01853 1.86498 1.41485 1.14718 1.83603 1.21105 0.86916 0.83759 0.71892 1.90842 1.17807 1.87221 1.47933 1.18145 0.93120 0.90976 1.18096 1.26914 0.97187 1.08527 0.98118 1.82497 1.00871 0.89042 1.58416 1.24853 0.99679 1.01985 1.21209 1.22600 0.93450 0.87396 0.68848 1.90626 1.30726 1.79488 1.37707 1.20708 1.01315 0.90016 0.92988 0.92686 0.98608 0.98616 0.91108 0.91116 0.91997 0.91985 0.77685 0.82012 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 3 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 8 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.09 -3.71 5.53 30.60 0.17 -3.54 16 11 C 0.08 2.92 5.48 71.98 0.39 3.31 16 12 O -0.35 -11.34 9.84 -56.79 -0.56 -11.90 16 13 C 0.52 16.81 7.92 70.18 0.56 17.37 16 14 O -0.55 -21.64 16.48 19.72 0.32 -21.32 16 15 C -0.19 -4.42 5.81 -21.12 -0.12 -4.55 16 16 C -0.17 -2.35 10.57 67.49 0.71 -1.63 16 17 S 0.42 2.60 23.02 -56.49 -1.30 1.30 16 18 C -0.36 -5.14 6.22 22.62 0.14 -5.00 16 19 C 0.42 5.36 11.46 68.61 0.79 6.14 16 20 O -0.51 -12.17 17.51 -3.46 -0.06 -12.23 16 21 C -0.02 -0.43 9.47 21.96 0.21 -0.23 16 22 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 23 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 24 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 25 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.21 2.20 8.00 -2.91 -0.02 2.18 16 30 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 31 H 0.14 3.73 7.92 -2.91 -0.02 3.70 16 Total: -1.00 -76.97 301.86 5.55 -71.42 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: 1.14 Total: 0.47 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.69 Total: -16.58 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.28 Total: -56.81 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.29 Total: -45.44 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.30 Total: 1.30 kcal Total: -76.97 5.55 -71.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754565974.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.411 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds