Wall clock time and date at job start Mon Mar 30 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31359 * 1 3 3 Si 1.86800 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47102 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47094 * 299.99642 * 3 2 1 6 6 H 1.48501 * 109.47014 * 59.99711 * 3 2 1 7 7 C 1.39051 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00074 * 194.94691 * 7 2 1 9 9 N 1.36879 * 119.99732 * 14.95124 * 7 2 1 10 10 C 1.46498 * 120.00038 * 7.60337 * 9 7 2 11 11 C 1.50700 * 109.46843 * 275.08896 * 10 9 7 12 12 O 1.20832 * 120.00050 * 0.02562 * 11 10 9 13 13 O 1.34227 * 120.00055 * 180.02562 * 11 10 9 14 14 C 1.34778 * 119.99590 * 187.59234 * 9 7 2 15 15 O 1.21587 * 120.00227 * 5.08339 * 14 9 7 16 16 C 1.47723 * 119.99671 * 185.07711 * 14 9 7 17 17 C 1.39630 * 120.55581 * 311.63571 * 16 14 9 18 18 N 1.31647 * 120.61463 * 179.97438 * 17 16 14 19 19 C 1.31950 * 121.91413 * 359.97438 * 18 17 16 20 20 C 1.38556 * 121.05535 * 0.02562 * 19 18 17 21 21 F 1.35096 * 120.36440 * 179.97438 * 20 19 18 22 22 C 1.38590 * 119.25967 * 0.02562 * 20 19 18 23 23 H 0.97002 * 120.00382 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47266 * 35.08852 * 10 9 7 25 25 H 1.09002 * 109.46763 * 155.09003 * 10 9 7 26 26 H 0.96701 * 117.00021 * 179.97438 * 13 11 10 27 27 H 1.08003 * 119.69621 * 359.95867 * 17 16 14 28 28 H 1.07997 * 119.47140 * 180.02562 * 19 18 17 29 29 H 1.08008 * 120.86333 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.7076 1.3464 0.0006 5 1 1.8889 2.3964 -1.2125 6 1 1.8888 2.3964 1.2125 7 6 2.0089 -1.2042 0.0005 8 1 3.0615 -1.2199 0.2418 9 7 1.3592 -2.3697 -0.3048 10 6 -0.0216 -2.3324 -0.7929 11 6 -0.9674 -2.2790 0.3792 12 8 -0.5326 -2.2722 1.5066 13 8 -2.2928 -2.2389 0.1708 14 6 1.9899 -3.5515 -0.1566 15 8 3.1014 -3.5900 0.3348 16 6 1.3307 -4.8001 -0.5910 17 6 0.0124 -5.0728 -0.2203 18 7 -0.5764 -6.1849 -0.6071 19 6 0.0438 -7.0796 -1.3528 20 6 1.3527 -6.8844 -1.7632 21 9 1.9745 -7.8099 -2.5261 22 6 2.0173 -5.7298 -1.3813 23 1 -0.4851 0.8400 -0.0004 24 1 -0.1634 -1.4485 -1.4147 25 1 -0.2230 -3.2272 -1.3818 26 1 -2.8594 -2.2058 0.9537 27 1 -0.5292 -4.3651 0.3898 28 1 -0.4772 -7.9783 -1.6481 29 1 3.0378 -5.5510 -1.6868 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066473.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:26 Heat of formation + Delta-G solvation = -129.398002 kcal Electronic energy + Delta-G solvation = -20645.686462 eV Core-core repulsion = 17062.819259 eV Total energy + Delta-G solvation = -3582.867203 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.069 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.07845 -41.98766 -40.70524 -39.74184 -37.18099 -36.40640 -34.14242 -33.51428 -32.08922 -29.65548 -27.47201 -25.28600 -24.74279 -22.92855 -21.56398 -19.31582 -18.99094 -18.75282 -18.43113 -18.25471 -17.56205 -17.14922 -16.87969 -16.56229 -16.21155 -15.99632 -15.32137 -14.96525 -14.66300 -14.51788 -14.30599 -13.80612 -13.64913 -13.42251 -13.27244 -12.70346 -12.49215 -12.17598 -12.12796 -11.60606 -11.38011 -11.07753 -11.05167 -10.51186 -10.13189 -10.07461 -8.54393 -6.05651 -0.49268 -0.19046 1.29862 1.41445 1.55785 1.59242 1.78083 2.09654 2.39863 2.45234 2.65669 2.94647 3.04370 3.21971 3.49186 3.59941 3.66065 4.03265 4.09688 4.36942 4.62838 4.73955 4.78767 4.89237 5.34976 5.38488 5.79911 5.94122 6.22591 6.53837 6.92782 7.12113 7.39776 7.68802 8.49654 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024880 B = 0.007035 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.146816 B = 3979.249268 C = 4770.350342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.002 3.998 3 Si 1.004 2.996 4 H -0.272 1.272 5 H -0.258 1.258 6 H -0.281 1.281 7 C -0.331 4.331 8 H 0.089 0.911 9 N -0.422 5.422 10 C 0.137 3.863 11 C 0.507 3.493 12 O -0.553 6.553 13 O -0.515 6.515 14 C 0.474 3.526 15 O -0.614 6.614 16 C -0.136 4.136 17 C 0.105 3.895 18 N -0.458 5.458 19 C 0.096 3.904 20 C 0.059 3.941 21 F -0.119 7.119 22 C -0.072 4.072 23 H 0.282 0.718 24 H 0.133 0.867 25 H 0.103 0.897 26 H 0.415 0.585 27 H 0.146 0.854 28 H 0.215 0.785 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.427 -7.820 -6.599 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.199 4.199 3 Si 0.827 3.173 4 H -0.196 1.196 5 H -0.183 1.183 6 H -0.207 1.207 7 C -0.458 4.458 8 H 0.107 0.893 9 N -0.138 5.138 10 C 0.012 3.988 11 C 0.351 3.649 12 O -0.443 6.443 13 O -0.327 6.327 14 C 0.264 3.736 15 O -0.502 6.502 16 C -0.142 4.142 17 C -0.052 4.052 18 N -0.165 5.165 19 C -0.063 4.063 20 C 0.038 3.962 21 F -0.098 7.098 22 C -0.100 4.100 23 H 0.093 0.907 24 H 0.150 0.850 25 H 0.120 0.880 26 H 0.275 0.725 27 H 0.163 0.837 28 H 0.232 0.768 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.529 -7.838 -6.178 11.409 hybrid contribution 1.065 1.136 0.658 1.690 sum -4.464 -6.702 -5.520 9.763 Atomic orbital electron populations 1.69560 1.06810 1.29200 1.47661 1.26066 0.96449 1.02585 0.94763 0.84711 0.78104 0.76114 0.78379 1.19619 1.18266 1.20660 1.19867 0.95259 0.83637 1.47060 0.89334 1.43542 1.10553 1.05297 1.54413 1.21120 0.79498 1.05335 0.92832 1.23293 0.81611 0.69280 0.90765 1.90628 1.78476 1.48219 1.26968 1.84440 1.18285 1.86036 1.43958 1.18160 0.87231 0.83322 0.84895 1.90605 1.22742 1.86511 1.50316 1.20817 0.95875 0.96626 1.00874 1.22983 0.90756 0.94761 0.96741 1.67813 1.36629 1.01512 1.10578 1.23694 0.90007 0.99608 0.92982 1.18520 0.93374 0.88070 0.96277 1.91552 1.82396 1.63263 1.72581 1.21755 1.01476 0.91680 0.95043 0.90710 0.84961 0.87973 0.72531 0.83691 0.76814 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -43.67 8.15 21.68 0.18 -43.49 15 2 C 0.00 0.12 5.18 84.96 0.44 0.56 15 3 Si 1.00 40.52 29.58 68.60 2.03 42.55 15 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 5 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 6 H -0.28 -11.34 7.11 99.48 0.71 -10.64 15 7 C -0.33 -18.12 9.36 84.10 0.79 -17.34 15 8 H 0.09 5.19 7.25 -2.91 -0.02 5.17 15 9 N -0.42 -21.33 2.15 -643.01 -1.38 -22.71 15 10 C 0.14 5.91 4.81 85.63 0.41 6.32 15 11 C 0.51 21.91 3.79 71.24 0.27 22.18 15 12 O -0.55 -28.48 16.46 21.95 0.36 -28.11 15 13 O -0.52 -17.42 13.42 -51.38 -0.69 -18.11 15 14 C 0.47 23.64 7.21 86.75 0.63 24.27 15 15 O -0.61 -35.17 16.64 -3.99 -0.07 -35.24 15 16 C -0.14 -5.32 4.95 -20.00 -0.10 -5.42 15 17 C 0.10 3.74 8.72 85.06 0.74 4.48 15 18 N -0.46 -13.58 10.34 -194.52 -2.01 -15.59 15 19 C 0.10 2.22 11.16 84.75 0.95 3.17 15 20 C 0.06 1.51 7.33 22.43 0.16 1.68 15 21 F -0.12 -2.76 17.28 44.97 0.78 -1.98 15 22 C -0.07 -2.33 9.87 22.79 0.22 -2.10 15 23 H 0.28 12.93 8.31 -92.71 -0.77 12.16 15 24 H 0.13 5.84 6.26 -2.39 -0.01 5.82 15 25 H 0.10 3.75 5.45 -2.39 -0.01 3.73 15 26 H 0.42 10.42 9.10 -74.06 -0.67 9.75 15 27 H 0.15 5.64 4.51 -2.91 -0.01 5.63 15 28 H 0.22 2.95 8.06 -2.91 -0.02 2.92 15 29 H 0.16 4.84 8.06 -2.91 -0.02 4.82 15 Total: -1.00 -69.12 264.73 4.27 -64.85 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.57 Total: 20.03 kcal Atomic # 6 Polarization: 33.28 SS G_CDS: 4.51 Total: 37.80 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -3.22 Total: -81.79 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -0.39 Total: -81.46 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -69.12 4.27 -64.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066473.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.551 kcal (2) G-P(sol) polarization free energy of solvation -69.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds