Wall clock time and date at job start Mon Mar 30 2020 00:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 N 1.39146 * 124.43695 * 299.70297 * 12 2 1 14 14 C 1.27573 * 113.16251 * 179.76586 * 13 12 2 15 15 C 1.50699 * 126.41362 * 180.14521 * 14 13 12 16 16 F 1.39900 * 109.47243 * 0.38272 * 15 14 13 17 17 F 1.39905 * 109.46965 * 120.37962 * 15 14 13 18 18 F 1.39900 * 109.47543 * 240.37640 * 15 14 13 19 19 C 1.51440 * 107.16476 * 0.46914 * 14 13 12 20 20 H 1.08996 * 110.60942 * 118.23347 * 19 14 13 21 21 F 1.39904 * 110.60080 * 241.20087 * 19 14 13 22 22 C 1.34950 * 124.43781 * 119.99536 * 12 2 1 23 23 O 1.21302 * 127.50407 * 0.02562 * 22 12 2 24 24 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 27 27 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 7 1.7446 -2.0195 -1.5045 14 6 2.2742 -2.3997 -2.6011 15 6 2.1681 -3.7706 -3.2178 16 9 1.3791 -4.5890 -2.4025 17 9 1.5808 -3.6683 -4.4835 18 9 3.4458 -4.3271 -3.3403 19 6 3.0362 -1.2176 -3.1628 20 1 4.0991 -1.4470 -3.2381 21 9 2.5214 -0.8477 -4.4100 22 6 2.7974 -0.1227 -2.1406 23 8 3.2159 1.0155 -2.1663 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.7096 1.1617 3.4844 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871948811.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:30 Heat of formation + Delta-G solvation = -182.412356 kcal Electronic energy + Delta-G solvation = -21004.349321 eV Core-core repulsion = 16877.326503 eV Total energy + Delta-G solvation = -4127.022818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.32554 -49.40824 -48.82297 -48.79047 -42.43446 -39.10837 -36.68040 -34.03145 -31.36402 -30.11487 -27.89021 -27.41271 -23.83179 -23.11469 -21.64962 -19.76486 -19.63480 -19.35103 -18.89977 -18.38686 -17.88540 -17.32677 -17.00102 -16.04025 -15.99360 -15.66188 -15.57056 -15.20400 -14.92626 -14.91622 -14.89213 -14.66927 -14.42429 -14.19757 -13.87919 -13.68702 -13.27918 -12.94537 -12.84625 -12.47536 -12.31633 -12.03153 -11.54090 -11.13793 -10.66054 -10.19475 -8.28155 -6.44936 -0.40550 0.61505 0.99958 1.18833 1.42661 1.43379 1.51885 1.97823 2.11733 2.36338 2.74914 3.01869 3.07383 3.14423 3.19266 3.81017 3.98124 4.53002 4.65229 4.73762 4.88923 5.28471 5.51392 5.70462 5.85146 6.14855 6.26348 6.61428 7.25364 8.77095 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.022669 B = 0.006807 C = 0.005893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.847194 B = 4112.450909 C = 4750.356837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.284 3.716 3 H 0.044 0.956 4 C -0.548 4.548 5 H 0.060 0.940 6 C 0.026 3.974 7 N -0.910 5.910 8 Si 0.968 3.032 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.268 1.268 12 N -0.437 5.437 13 N -0.124 5.124 14 C -0.059 4.059 15 C 0.579 3.421 16 F -0.160 7.160 17 F -0.152 7.152 18 F -0.150 7.150 19 C 0.090 3.910 20 H 0.197 0.803 21 F -0.158 7.158 22 C 0.473 3.527 23 O -0.495 6.495 24 H 0.085 0.915 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.986 -9.411 -10.969 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.186 3.814 3 H 0.061 0.939 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.175 4.175 7 N -0.548 5.548 8 Si 0.793 3.207 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.193 1.193 12 N -0.258 5.258 13 N 0.068 4.932 14 C -0.255 4.255 15 C 0.523 3.477 16 F -0.141 7.141 17 F -0.134 7.134 18 F -0.131 7.131 19 C 0.049 3.951 20 H 0.214 0.786 21 F -0.139 7.139 22 C 0.257 3.743 23 O -0.367 6.367 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.504 -8.739 -9.950 13.477 hybrid contribution 0.482 0.140 0.263 0.567 sum 2.986 -8.599 -9.687 13.293 Atomic orbital electron populations 1.21937 0.95708 1.00792 1.01074 1.19102 0.93003 0.90908 0.78401 0.93872 1.21329 1.33313 1.13466 0.90485 0.92160 1.25643 0.94628 0.95499 1.01774 1.69938 1.36281 1.23296 1.25283 0.85445 0.78644 0.78780 0.77848 1.19800 1.20353 1.19293 1.50777 1.46200 1.05226 1.23561 1.74588 1.09296 0.96954 1.12406 1.25788 1.04462 0.97839 0.97433 1.16238 0.74936 0.80590 0.75979 1.93288 1.74443 1.73719 1.72676 1.93300 1.84029 1.95996 1.40029 1.93289 1.38255 1.85823 1.95731 1.21713 1.03746 0.89490 0.80161 0.78599 1.92969 1.88790 1.92249 1.39869 1.22021 0.78836 0.88942 0.84455 1.90770 1.51106 1.18287 1.76527 0.89627 0.93580 0.95413 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.41 9.19 71.98 0.66 -5.75 15 2 C 0.28 14.10 2.98 44.24 0.13 14.24 15 3 H 0.04 2.41 7.68 -2.39 -0.02 2.39 15 4 C -0.55 -28.76 8.71 25.60 0.22 -28.54 15 5 H 0.06 3.15 7.81 -2.91 -0.02 3.13 15 6 C 0.03 1.35 5.30 84.66 0.45 1.79 15 7 N -0.91 -49.12 11.32 21.45 0.24 -48.87 15 8 Si 0.97 41.35 29.54 68.60 2.03 43.38 15 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 10 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 12 N -0.44 -18.59 3.23 -444.72 -1.44 -20.03 15 13 N -0.12 -4.57 11.55 -40.84 -0.47 -5.05 15 14 C -0.06 -1.69 6.65 46.83 0.31 -1.38 15 15 C 0.58 13.36 3.56 71.24 0.25 13.61 15 16 F -0.16 -4.07 17.14 44.97 0.77 -3.30 15 17 F -0.15 -3.32 17.30 44.97 0.78 -2.54 15 18 F -0.15 -2.98 17.30 44.97 0.78 -2.20 15 19 C 0.09 2.48 4.80 29.65 0.14 2.63 15 20 H 0.20 3.62 8.14 -2.39 -0.02 3.60 15 21 F -0.16 -4.37 17.16 44.97 0.77 -3.60 15 22 C 0.47 18.39 8.21 87.94 0.72 19.12 15 23 O -0.50 -22.12 17.57 -3.10 -0.05 -22.18 15 24 H 0.09 4.34 6.07 -2.39 -0.01 4.33 15 25 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.03 1.18 8.14 -2.38 -0.02 1.16 15 27 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15 Total: -1.00 -58.54 267.13 7.54 -51.00 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: 1.24 Total: -2.32 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 2.89 Total: 15.72 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.66 Total: -73.95 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 3.10 Total: -11.65 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -58.54 7.54 -51.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871948811.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.411 kcal (2) G-P(sol) polarization free energy of solvation -58.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds