Wall clock time and date at job start Mon Mar 30 2020 01:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38586 * 120.71996 * 2 1 4 4 C 1.38780 * 119.26024 * 180.23132 * 3 2 1 5 5 O 1.35677 * 119.64166 * 179.72503 * 4 3 2 6 6 N 1.32318 * 120.71603 * 359.49698 * 4 3 2 7 7 C 1.32422 * 121.55810 * 0.48868 * 6 4 3 8 8 N 1.39405 * 119.65759 * 179.75541 * 7 6 4 9 9 C 1.34777 * 119.99877 * 354.93802 * 8 7 6 10 10 O 1.21278 * 120.00234 * 5.08516 * 9 8 7 11 11 C 1.50699 * 119.99683 * 185.09088 * 9 8 7 12 12 S 1.81006 * 109.47065 * 179.97438 * 11 9 8 13 13 C 1.76196 * 99.99831 * 179.97438 * 12 11 9 14 14 H 1.07996 * 120.00493 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99756 * 180.02562 * 13 12 11 16 16 N 1.31629 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99994 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46946 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47017 * 119.99568 * 17 15 13 20 20 H 1.48496 * 109.46989 * 239.99827 * 17 15 13 21 21 C 1.38513 * 120.72072 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.46811 * 90.00407 * 1 2 3 23 23 H 1.08996 * 109.47135 * 210.00200 * 1 2 3 24 24 H 1.08997 * 109.47223 * 330.00366 * 1 2 3 25 25 H 1.08007 * 120.37290 * 359.94856 * 3 2 1 26 26 H 0.96701 * 114.00092 * 90.00162 * 5 4 3 27 27 H 0.96998 * 120.00027 * 174.94229 * 8 7 6 28 28 H 1.08995 * 109.47272 * 299.99643 * 11 9 8 29 29 H 1.09000 * 109.47650 * 59.99773 * 11 9 8 30 30 H 0.97003 * 120.00126 * 180.02562 * 16 15 13 31 31 H 1.07997 * 120.38733 * 0.04840 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1914 0.0000 4 6 3.6023 1.1560 -0.0049 5 8 4.3031 2.3178 -0.0106 6 7 4.2490 0.0017 0.0005 7 6 3.6033 -1.1545 0.0010 8 7 4.3246 -2.3474 0.0016 9 6 5.6682 -2.3225 -0.1014 10 8 6.2568 -1.2622 -0.1016 11 6 6.4390 -3.6123 -0.2164 12 16 8.2080 -3.2491 -0.3386 13 6 8.8489 -4.8861 -0.4574 14 1 8.1772 -5.7316 -0.4405 15 6 10.2172 -5.0890 -0.5718 16 7 11.0360 -4.0586 -0.5920 17 14 10.8967 -6.8245 -0.6986 18 1 9.7771 -7.7990 -0.6532 19 1 11.6332 -6.9754 -1.9792 20 1 11.8199 -7.0787 0.4364 21 6 2.2146 -1.1908 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6929 2.1369 -0.0008 26 1 4.5095 2.6570 0.8712 27 1 3.8595 -3.1953 0.0760 28 1 6.2538 -4.2261 0.6651 29 1 6.1165 -4.1502 -1.1079 30 1 11.9923 -4.2004 -0.6723 31 1 1.6928 -2.1363 0.0002 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910598422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:10 Heat of formation + Delta-G solvation = -30.007231 kcal Electronic energy + Delta-G solvation = -17089.500933 eV Core-core repulsion = 14077.156813 eV Total energy + Delta-G solvation = -3012.344120 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.87075 -39.04587 -37.15869 -34.82708 -33.39019 -32.44301 -30.24160 -28.51384 -28.10390 -25.51406 -23.31189 -22.69635 -20.24262 -18.77582 -17.80395 -17.10825 -16.73630 -16.11783 -15.75946 -15.48853 -14.93175 -14.81684 -14.11934 -13.96849 -13.32640 -13.13511 -13.05005 -12.87269 -12.60626 -12.13732 -11.95020 -11.66962 -11.07973 -11.03773 -10.78281 -10.46233 -9.97872 -9.83369 -9.56393 -9.08707 -8.88363 -8.25930 -8.25114 -6.52413 -6.23000 -3.94190 0.93129 1.16059 2.72818 2.98136 3.21079 3.22535 3.29905 3.43963 3.62510 3.90327 4.18229 4.39176 4.74830 4.86916 4.95557 5.02290 5.12280 5.22126 5.27509 5.39865 5.55335 5.59794 5.72669 5.81516 6.06238 6.09175 6.15533 6.65970 7.22294 7.48810 7.58537 8.07045 8.33846 8.53156 9.22237 10.84435 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.044769 B = 0.003660 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.289555 B = 7648.271276 C = 8245.370162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.003 4.003 3 C -0.229 4.229 4 C 0.349 3.651 5 O -0.480 6.480 6 N -0.499 5.499 7 C 0.401 3.599 8 N -0.666 5.666 9 C 0.516 3.484 10 O -0.442 6.442 11 C -0.153 4.153 12 S -0.056 6.056 13 C -0.536 4.536 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.867 5.867 17 Si 0.920 3.080 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.228 4.228 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.137 0.863 26 H 0.401 0.599 27 H 0.417 0.583 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.268 0.732 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.087 5.678 3.017 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.011 4.011 3 C -0.252 4.252 4 C 0.169 3.831 5 O -0.287 6.287 6 N -0.225 5.225 7 C 0.168 3.832 8 N -0.314 5.314 9 C 0.301 3.699 10 O -0.308 6.308 11 C -0.303 4.303 12 S 0.170 5.830 13 C -0.684 4.684 14 H 0.092 0.908 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.746 3.254 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.252 4.252 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.155 0.845 26 H 0.259 0.741 27 H 0.254 0.746 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.078 0.922 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.911 7.457 2.384 21.395 hybrid contribution -1.155 -2.680 0.401 2.946 sum -21.066 4.777 2.786 21.780 Atomic orbital electron populations 1.20811 0.89813 1.03367 1.03040 1.19892 0.96514 0.91717 0.92970 1.21807 0.93703 0.99309 1.10389 1.18933 0.86627 0.84778 0.92797 1.84773 1.76205 1.33737 1.33975 1.67055 1.40984 0.97051 1.17365 1.18106 0.87470 0.85719 0.91891 1.43937 1.07926 1.06662 1.72857 1.20664 0.80821 0.92009 0.76373 1.90836 1.67053 1.31461 1.41424 1.23561 1.04867 0.96739 1.05156 1.85488 0.89925 1.11629 1.95926 1.22900 0.94798 0.92215 1.58536 0.90784 1.25005 0.95838 0.98244 0.94526 1.70028 1.03698 1.29877 1.46573 0.86099 0.78872 0.82470 0.77940 1.19599 1.20547 1.20559 1.21300 0.92306 0.99603 1.11954 0.90310 0.90869 0.90892 0.84470 0.74088 0.74640 0.88897 0.88856 0.92183 0.84416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.06 36.01 0.36 -0.30 16 2 C 0.00 -0.03 5.91 -104.39 -0.62 -0.65 16 3 C -0.23 -2.49 9.74 -39.25 -0.38 -2.88 16 4 C 0.35 5.05 7.74 -17.14 -0.13 4.92 16 5 O -0.48 -6.41 13.56 -18.73 -0.25 -6.66 16 6 N -0.50 -8.84 7.91 -12.44 -0.10 -8.94 16 7 C 0.40 5.93 7.42 -154.69 -1.15 4.78 16 8 N -0.67 -9.57 5.39 -11.44 -0.06 -9.63 16 9 C 0.52 10.02 7.81 -10.99 -0.09 9.94 16 10 O -0.44 -10.61 14.12 5.56 0.08 -10.53 16 11 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 12 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 13 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 14 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16 17 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 18 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 C -0.23 -2.43 9.63 -39.23 -0.38 -2.80 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 24 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 25 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 26 H 0.40 3.28 9.06 45.56 0.41 3.69 16 27 H 0.42 4.07 8.70 -40.82 -0.36 3.72 16 28 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 29 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 295.72 15.07 4.46 4.46 Total: -1.00 -38.04 295.72 -6.78 -44.82 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -2.44 Total: 2.12 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.96 Total: -2.75 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.57 Total: -44.06 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.18 Total: -17.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -38.04 -6.78 -44.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910598422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.815 kcal (2) G-P(sol) polarization free energy of solvation -38.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds