Wall clock time and date at job start Mon Mar 30 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00503 * 2 1 4 4 H 1.48497 * 109.47342 * 240.00036 * 3 2 1 5 5 H 1.48496 * 109.46978 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47127 * 119.99928 * 3 2 1 7 7 C 1.37879 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00548 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99859 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.47198 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47231 * 180.02562 * 10 9 7 12 12 C 1.34221 * 116.99903 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00367 * 359.97438 * 12 11 10 14 14 C 1.50706 * 120.00092 * 180.02562 * 12 11 10 15 15 C 1.50698 * 109.47294 * 180.02562 * 14 12 11 16 16 C 1.38226 * 120.01014 * 99.99683 * 15 14 12 17 17 C 1.38227 * 120.01636 * 179.97438 * 16 15 14 18 18 C 1.38265 * 120.02042 * 0.04418 * 17 16 15 19 19 C 1.38191 * 120.01661 * 359.97438 * 18 17 16 20 20 C 1.38333 * 120.00232 * 279.72237 * 15 14 12 21 21 Cl 1.73605 * 120.01417 * 359.97438 * 20 15 14 22 22 H 0.97004 * 119.99251 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47012 * 59.99788 * 9 7 2 24 24 H 1.08993 * 109.47314 * 299.99749 * 9 7 2 25 25 H 1.08995 * 109.46885 * 60.00073 * 10 9 7 26 26 H 1.09006 * 109.46726 * 300.00441 * 10 9 7 27 27 H 1.09001 * 109.46953 * 299.99668 * 14 12 11 28 28 H 1.09000 * 109.47318 * 59.99266 * 14 12 11 29 29 H 1.08002 * 119.99409 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.98730 * 180.02562 * 17 16 15 31 31 H 1.08004 * 119.98567 * 179.97438 * 18 17 16 32 32 H 1.07995 * 120.00693 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2844 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1943 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 8 1.5190 -4.9196 -0.0024 12 6 2.2500 -6.0453 -0.0030 13 8 3.4566 -5.9822 -0.0035 14 6 1.5657 -7.3881 -0.0043 15 6 2.6035 -8.4808 -0.0041 16 6 2.9281 -9.1258 1.1745 17 6 3.8797 -10.1284 1.1747 18 6 4.5079 -10.4861 -0.0039 19 6 4.1846 -9.8417 -1.1828 20 6 3.2274 -8.8424 -1.1847 21 17 2.8147 -8.0380 -2.6667 22 1 -0.4849 0.8401 0.0004 23 1 0.6238 -2.5566 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8724 -3.6049 0.8877 26 1 2.8711 -3.6040 -0.8923 27 1 0.9427 -7.4792 0.8855 28 1 0.9431 -7.4779 -0.8945 29 1 2.4376 -8.8469 2.0954 30 1 4.1326 -10.6324 2.0958 31 1 5.2516 -11.2693 -0.0030 32 1 4.6751 -10.1214 -2.1034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916599251.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:39 Heat of formation + Delta-G solvation = -102.095298 kcal Electronic energy + Delta-G solvation = -17201.773267 eV Core-core repulsion = 14151.966717 eV Total energy + Delta-G solvation = -3049.806550 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.59658 -40.16756 -37.67792 -37.45454 -35.45809 -34.12456 -32.33027 -31.68358 -29.13263 -26.93967 -23.74378 -23.67670 -22.75130 -21.61181 -19.02872 -18.16389 -18.08504 -17.74086 -17.19378 -16.55562 -16.48235 -16.20604 -15.12338 -14.80093 -14.64226 -14.44956 -14.25215 -13.93279 -13.43804 -13.02859 -13.00984 -12.69068 -12.57625 -12.57316 -12.49354 -12.25074 -11.89229 -11.76898 -11.54447 -11.47758 -11.36206 -10.61817 -9.91333 -9.67075 -8.27914 -6.41424 0.11578 0.27394 1.13826 1.20246 1.40184 1.43968 1.51865 1.81010 2.39420 2.71719 3.06279 3.44626 3.74695 3.88140 4.05508 4.19946 4.25474 4.25821 4.38233 4.44177 4.53929 4.67877 4.72511 4.94386 5.24585 5.26716 5.36477 5.45319 5.45776 5.55283 5.73890 5.86853 6.05481 6.70433 6.76190 7.28307 8.84530 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.036560 B = 0.003575 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.690705 B = 7830.889851 C = 8030.427514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.366 6.366 12 C 0.457 3.543 13 O -0.533 6.533 14 C -0.074 4.074 15 C -0.086 4.086 16 C -0.101 4.101 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.122 4.122 20 C -0.039 4.039 21 Cl -0.084 7.084 22 H 0.268 0.732 23 H 0.005 0.995 24 H 0.008 0.992 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.148 0.852 28 H 0.125 0.875 29 H 0.152 0.848 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -23.430 0.951 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.006 4.006 10 C 0.019 3.981 11 O -0.282 6.282 12 C 0.301 3.699 13 O -0.423 6.423 14 C -0.111 4.111 15 C -0.087 4.087 16 C -0.119 4.119 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.066 4.066 21 Cl -0.055 7.055 22 H 0.077 0.923 23 H 0.024 0.976 24 H 0.027 0.973 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.166 0.834 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.180 0.820 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 6.043 -23.181 0.811 23.970 hybrid contribution 0.211 1.285 -0.413 1.366 sum 6.254 -21.897 0.398 22.776 Atomic orbital electron populations 1.70090 1.07805 1.28375 1.50251 1.25965 0.95857 1.03400 0.94004 0.85376 0.78212 0.77413 0.79317 1.19150 1.20344 1.18968 1.21349 0.93665 0.91313 1.52730 0.91809 1.18976 0.94321 0.90585 0.96706 1.23121 0.95019 0.79225 1.00732 1.86504 1.42639 1.15799 1.83305 1.24169 0.86550 0.87426 0.71765 1.90627 1.16837 1.88426 1.46397 1.20454 0.97474 0.84269 1.08916 1.19324 0.98685 0.97520 0.93207 1.21371 0.97989 0.95834 0.96746 1.21638 0.95222 0.96645 0.99759 1.21550 0.99617 0.99673 0.91260 1.21316 0.96494 0.95350 1.00930 1.21094 1.00486 0.97891 0.87102 1.98375 1.92808 1.79627 1.34660 0.92281 0.97638 0.97317 0.92204 0.92718 0.83425 0.85712 0.83037 0.82173 0.81987 0.83702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.01 0.39 5.46 84.66 0.46 0.86 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.91 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 4.29 5.40 71.98 0.39 4.68 16 11 O -0.37 -15.04 10.22 -51.33 -0.52 -15.57 16 12 C 0.46 16.09 7.74 71.24 0.55 16.64 16 13 O -0.53 -21.54 15.70 21.96 0.34 -21.19 16 14 C -0.07 -1.81 5.41 29.10 0.16 -1.65 16 15 C -0.09 -2.02 4.42 -19.85 -0.09 -2.10 16 16 C -0.10 -1.84 9.67 22.26 0.22 -1.62 16 17 C -0.11 -1.64 10.05 22.27 0.22 -1.42 16 18 C -0.10 -1.49 10.05 22.26 0.22 -1.26 16 19 C -0.12 -2.34 9.83 22.29 0.22 -2.12 16 20 C -0.04 -0.95 6.21 22.32 0.14 -0.81 16 21 Cl -0.08 -2.22 27.34 -2.72 -0.07 -2.30 16 22 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 23 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.06 2.73 8.13 -2.39 -0.02 2.71 16 26 H 0.05 2.55 8.13 -2.38 -0.02 2.53 16 27 H 0.15 2.61 8.00 -2.39 -0.02 2.59 16 28 H 0.12 2.82 7.34 -2.39 -0.02 2.81 16 29 H 0.15 2.05 8.04 -2.91 -0.02 2.03 16 30 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -70.52 302.27 6.06 -64.46 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: 1.12 Total: 2.82 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 2.89 Total: -18.61 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.18 Total: -36.76 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -2.22 SS G_CDS: -0.07 Total: -2.30 kcal Total: -70.52 6.06 -64.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916599251.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.638 kcal (2) G-P(sol) polarization free energy of solvation -70.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds