Wall clock time and date at job start Mon Mar 30 2020 02:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00177 * 2 1 4 4 H 1.48497 * 109.47006 * 89.99546 * 3 2 1 5 5 H 1.48495 * 109.47234 * 209.99692 * 3 2 1 6 6 H 1.48504 * 109.46864 * 330.00221 * 3 2 1 7 7 C 1.37877 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 5.64644 * 7 2 1 9 9 C 1.50708 * 119.99697 * 185.64584 * 7 2 1 10 10 H 1.08995 * 109.47207 * 305.16496 * 9 7 2 11 11 C 1.53001 * 109.47194 * 65.16973 * 9 7 2 12 12 Cl 1.80294 * 109.46948 * 185.57061 * 11 9 7 13 13 O 1.42904 * 109.46679 * 185.16559 * 9 7 2 14 14 C 1.35851 * 116.99563 * 144.48867 * 13 9 7 15 15 C 1.38492 * 120.13742 * 359.74728 * 14 13 9 16 16 C 1.38237 * 120.09893 * 179.97438 * 15 14 13 17 17 C 1.38427 * 120.37132 * 0.03699 * 16 15 14 18 18 C 1.37931 * 120.26969 * 0.02562 * 17 16 15 19 19 C 1.39638 * 119.89348 * 359.68230 * 18 17 16 20 20 C 1.47442 * 120.18046 * 180.32190 * 19 18 17 21 21 N 1.29759 * 119.99922 * 180.27522 * 20 19 18 22 22 N 1.40101 * 119.99978 * 179.97438 * 21 20 19 23 23 H 0.97002 * 120.00346 * 174.98193 * 1 2 3 24 24 H 1.09001 * 109.46946 * 305.57511 * 11 9 7 25 25 H 1.08999 * 109.46754 * 65.56975 * 11 9 7 26 26 H 1.08000 * 119.95157 * 359.96835 * 15 14 13 27 27 H 1.08007 * 119.81448 * 180.02562 * 16 15 14 28 28 H 1.08002 * 119.86105 * 179.97438 * 17 16 15 29 29 H 1.07995 * 120.05126 * 179.97438 * 18 17 16 30 30 H 1.07998 * 120.00143 * 0.26568 * 20 19 18 31 31 H 0.96996 * 120.00054 * 179.97438 * 22 21 20 32 32 H 0.97002 * 120.00010 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.6999 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4684 -2.1272 -0.0911 9 6 3.5061 -1.1971 0.1289 10 1 3.9384 -0.5658 -0.6473 11 6 3.9014 -0.6569 1.5047 12 17 5.6956 -0.5066 1.5985 13 8 3.9938 -2.5324 -0.0166 14 6 5.1862 -2.6880 -0.6487 15 6 5.8708 -1.5818 -1.1239 16 6 7.0843 -1.7409 -1.7665 17 6 7.6237 -3.0038 -1.9407 18 6 6.9543 -4.1161 -1.4747 19 6 5.7307 -3.9678 -0.8185 20 6 5.0131 -5.1519 -0.3116 21 7 3.8737 -5.0104 0.2929 22 7 3.1916 -6.1356 0.7742 23 1 -0.4851 -0.8368 -0.0735 24 1 3.4464 0.3221 1.6551 25 1 3.5533 -1.3420 2.2777 26 1 5.4559 -0.5934 -0.9922 27 1 7.6145 -0.8750 -2.1348 28 1 8.5722 -3.1187 -2.4443 29 1 7.3782 -5.0998 -1.6129 30 1 5.4358 -6.1369 -0.4435 31 1 2.3400 -6.0298 1.2264 32 1 3.5710 -7.0204 0.6552 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229293705.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:37 Heat of formation + Delta-G solvation = 4.220386 kcal Electronic energy + Delta-G solvation = -18380.567556 eV Core-core repulsion = 15367.663951 eV Total energy + Delta-G solvation = -3012.903605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.97198 -38.48130 -37.29762 -36.74272 -35.34001 -33.10635 -32.07448 -30.75374 -29.39637 -26.79543 -24.36863 -24.34738 -21.80129 -21.45537 -19.80098 -18.89280 -17.75584 -17.65228 -16.65098 -16.19026 -16.11678 -15.73415 -15.48279 -14.85257 -14.62130 -14.52216 -14.11309 -14.04395 -13.71093 -13.17444 -12.84136 -12.49696 -12.40013 -12.26616 -11.92678 -11.74689 -11.46999 -11.13048 -10.92741 -10.78822 -10.65772 -10.22457 -9.14478 -8.93986 -8.40448 -6.62534 0.18191 0.74147 1.27478 1.36823 1.43530 1.58434 1.81181 2.30751 2.47840 2.66542 2.89392 3.13839 3.84981 3.99689 4.11447 4.15068 4.19439 4.30946 4.52267 4.61508 4.78988 4.85998 4.94970 5.19910 5.25614 5.43747 5.67238 5.72163 5.76962 5.85120 6.07737 6.33889 6.81431 6.89919 7.19599 7.65608 8.45221 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.008504 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.033997 B = 3291.736280 C = 4130.762299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 1.064 2.936 4 H -0.249 1.249 5 H -0.245 1.245 6 H -0.275 1.275 7 C -0.597 4.597 8 H 0.028 0.972 9 C 0.182 3.818 10 H 0.049 0.951 11 C -0.043 4.043 12 Cl -0.197 7.197 13 O -0.285 6.285 14 C 0.136 3.864 15 C -0.223 4.223 16 C -0.077 4.077 17 C -0.164 4.164 18 C -0.059 4.059 19 C -0.108 4.108 20 C 0.050 3.950 21 N -0.236 5.236 22 N -0.784 5.784 23 H 0.258 0.742 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.418 0.582 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.803 -6.392 -1.643 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.208 4.208 3 Si 0.884 3.116 4 H -0.174 1.174 5 H -0.169 1.169 6 H -0.200 1.200 7 C -0.635 4.635 8 H 0.047 0.953 9 C 0.125 3.875 10 H 0.067 0.933 11 C -0.106 4.106 12 Cl -0.171 7.171 13 O -0.196 6.196 14 C 0.086 3.914 15 C -0.242 4.242 16 C -0.096 4.096 17 C -0.182 4.182 18 C -0.079 4.079 19 C -0.111 4.111 20 C -0.160 4.160 21 N -0.047 5.047 22 N -0.438 5.438 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.161 0.839 28 H 0.176 0.824 29 H 0.181 0.819 30 H 0.156 0.844 31 H 0.251 0.749 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 14.833 -4.273 -1.134 15.478 hybrid contribution -0.495 -2.641 0.120 2.689 sum 14.338 -6.914 -1.013 15.950 Atomic orbital electron populations 1.70911 1.07602 1.30224 1.46820 1.27155 0.96293 1.05500 0.91817 0.83841 0.75858 0.72155 0.79789 1.17382 1.16907 1.20013 1.22045 0.90822 0.94704 1.55884 0.95350 1.20661 0.93761 0.81060 0.92028 0.93335 1.25725 0.78687 1.03586 1.02579 1.98657 1.20826 1.98720 1.98884 1.86385 1.32497 1.29612 1.71138 1.19719 0.85790 0.94424 0.91422 1.21415 0.99046 0.97953 1.05746 1.21301 0.93549 0.99107 0.95663 1.21236 1.01945 0.91365 1.03609 1.21297 0.91181 1.00882 0.94541 1.18141 0.97565 0.88619 1.06810 1.24039 0.93378 0.97553 1.01070 1.74655 1.08378 1.14810 1.06824 1.45656 1.26101 1.03035 1.68979 0.93274 0.88794 0.89318 0.86400 0.83899 0.82384 0.81936 0.84437 0.74877 0.78665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.14 13.70 21.45 0.29 -55.84 16 2 C -0.01 -0.43 5.43 84.66 0.46 0.03 16 3 Si 1.06 46.91 25.33 68.60 1.74 48.65 16 4 H -0.25 -9.89 6.76 99.48 0.67 -9.22 16 5 H -0.25 -9.70 6.36 99.48 0.63 -9.07 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.60 -34.24 9.24 25.60 0.24 -34.01 16 8 H 0.03 1.85 8.04 -2.91 -0.02 1.82 16 9 C 0.18 8.79 1.75 29.85 0.05 8.84 16 10 H 0.05 2.32 3.89 -2.39 -0.01 2.31 16 11 C -0.04 -1.84 5.92 71.98 0.43 -1.42 16 12 Cl -0.20 -7.31 25.76 -2.72 -0.07 -7.38 16 13 O -0.29 -13.58 7.59 -91.87 -0.70 -14.28 16 14 C 0.14 5.44 6.10 22.79 0.14 5.58 16 15 C -0.22 -8.00 7.15 22.33 0.16 -7.84 16 16 C -0.08 -2.10 10.03 22.31 0.22 -1.88 16 17 C -0.16 -3.68 10.03 22.24 0.22 -3.46 16 18 C -0.06 -1.42 9.79 22.54 0.22 -1.20 16 19 C -0.11 -3.63 5.88 -20.06 -0.12 -3.75 16 20 C 0.05 1.63 10.75 87.43 0.94 2.57 16 21 N -0.24 -9.07 9.71 -52.20 -0.51 -9.57 16 22 N -0.78 -23.22 10.43 37.02 0.39 -22.83 16 23 H 0.26 16.06 8.72 -92.71 -0.81 15.25 16 24 H 0.09 3.94 4.37 -2.39 -0.01 3.93 16 25 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 26 H 0.12 4.51 5.01 -2.91 -0.01 4.50 16 27 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.16 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.14 3.20 8.02 -2.91 -0.02 3.18 16 31 H 0.42 11.88 8.96 -213.32 -1.91 9.97 16 32 H 0.38 8.44 8.79 -213.32 -1.87 6.56 16 Total: -1.00 -69.46 282.93 1.35 -68.11 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -2.75 Total: 29.67 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 2.96 Total: -36.52 kcal Atomic # 7 Polarization: -88.42 SS G_CDS: 0.17 Total: -88.25 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.70 Total: -14.28 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.74 Total: 48.65 kcal Atomic # 17 Polarization: -7.31 SS G_CDS: -0.07 Total: -7.38 kcal Total: -69.46 1.35 -68.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229293705.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -69.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds