Wall clock time and date at job start Mon Mar 30 2020 02:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39776 * 120.01877 * 140.93849 * 3 2 1 5 5 C 1.37639 * 120.02560 * 179.71837 * 4 3 2 6 6 C 1.39493 * 120.05366 * 0.51492 * 5 4 3 7 7 C 1.48277 * 119.97790 * 179.76253 * 6 5 4 8 8 C 1.39783 * 120.41762 * 129.72108 * 7 6 5 9 9 N 1.31895 * 121.13912 * 180.02562 * 8 7 6 10 10 C 1.31533 * 122.13520 * 359.97438 * 9 8 7 11 11 C 1.40780 * 120.67658 * 0.02562 * 10 9 8 12 12 C 1.41438 * 120.59762 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99822 * 155.58168 * 12 11 10 14 14 C 1.39932 * 120.00108 * 335.57239 * 12 11 10 15 15 N 1.30821 * 120.00274 * 342.36027 * 14 12 11 16 16 Si 1.86804 * 119.99679 * 162.35369 * 14 12 11 17 17 H 1.48509 * 109.46988 * 94.68121 * 16 14 12 18 18 H 1.48502 * 109.47250 * 214.67796 * 16 14 12 19 19 H 1.48492 * 109.47293 * 334.67973 * 16 14 12 20 20 C 1.39213 * 120.41799 * 309.74576 * 7 6 5 21 21 C 1.39670 * 120.03941 * 359.48389 * 6 5 4 22 22 F 1.35102 * 120.01282 * 180.27506 * 21 6 5 23 23 C 1.37938 * 119.97967 * 0.25695 * 21 6 5 24 24 H 1.07999 * 119.98573 * 359.97438 * 4 3 2 25 25 H 1.07994 * 119.97322 * 180.27571 * 5 4 3 26 26 H 1.07994 * 119.42739 * 359.74684 * 8 7 6 27 27 H 1.07997 * 119.66566 * 180.02562 * 10 9 8 28 28 H 0.97005 * 120.00302 * 179.97438 * 15 14 12 29 29 H 1.07998 * 120.95739 * 359.97438 * 20 7 6 30 30 H 1.07999 * 120.03045 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 0.9407 -0.7627 5 6 4.6433 0.9451 -0.7582 6 6 5.3425 0.0049 -0.0012 7 6 6.8252 0.0079 -0.0018 8 6 7.5335 -0.0099 1.2031 9 7 8.8523 -0.0070 1.2192 10 6 9.5655 0.0121 0.1142 11 6 8.9375 0.0310 -1.1457 12 6 9.7060 0.0520 -2.3329 13 1 9.2853 -0.3208 -3.2551 14 6 11.0112 0.5561 -2.3126 15 7 11.4055 1.3111 -1.3198 16 14 12.1906 0.1505 -3.7033 17 1 12.1576 1.2385 -4.7136 18 1 13.5674 0.0191 -3.1624 19 1 11.7847 -1.1283 -4.3396 20 6 7.5296 0.0290 -1.2025 21 6 4.6467 -0.9355 0.7618 22 9 5.3244 -1.8424 1.4991 23 6 3.2673 -0.9380 0.7626 24 1 2.7266 1.6664 -1.3524 25 1 5.1824 1.6746 -1.3443 26 1 6.9914 -0.0217 2.1371 27 1 10.6438 0.0133 0.1738 28 1 12.3105 1.6602 -1.3055 29 1 7.0118 0.0431 -2.1501 30 1 2.7285 -1.6651 1.3520 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236530181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:22 Heat of formation + Delta-G solvation = 26.915584 kcal Electronic energy + Delta-G solvation = -18271.948532 eV Core-core repulsion = 15139.001609 eV Total energy + Delta-G solvation = -3132.946923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.67986 -39.44346 -38.22205 -36.47453 -34.18441 -32.72566 -30.79984 -30.73086 -28.83812 -25.76319 -24.29077 -22.86183 -21.46031 -21.06103 -19.24644 -17.69212 -16.52733 -15.95733 -15.94412 -15.61884 -15.36537 -15.09324 -14.37326 -14.00055 -13.97204 -13.71407 -13.40110 -13.00890 -12.73513 -12.40665 -12.01572 -11.97202 -11.76158 -11.62555 -11.39459 -11.30388 -10.94603 -10.79810 -10.24893 -9.51096 -9.27524 -8.89959 -8.37100 -7.94512 -7.57817 -7.02842 -4.62457 0.52373 1.13509 2.36151 2.49518 2.62434 2.93237 2.97225 3.00525 3.08132 3.64338 3.71307 3.77191 4.36770 4.46872 4.72758 4.85963 4.92367 5.21595 5.50097 5.57512 5.89161 5.93344 5.96005 6.14847 6.23981 6.27129 6.53181 6.73700 6.80096 6.93980 7.08879 7.31381 7.37564 7.56661 7.88299 8.16788 8.52020 8.57208 9.55355 9.94260 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.032610 B = 0.004269 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.414842 B = 6557.071704 C = 7068.841289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.264 3.736 3 C -0.024 4.024 4 C -0.076 4.076 5 C -0.088 4.088 6 C -0.006 4.006 7 C -0.101 4.101 8 C -0.010 4.010 9 N -0.476 5.476 10 C 0.055 3.945 11 C 0.061 3.939 12 C -0.450 4.450 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.787 5.787 16 Si 0.913 3.087 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.259 1.259 20 C -0.172 4.172 21 C 0.102 3.898 22 F -0.125 7.125 23 C -0.106 4.106 24 H 0.137 0.863 25 H 0.146 0.854 26 H 0.121 0.879 27 H 0.152 0.848 28 H 0.287 0.713 29 H 0.108 0.892 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 -0.752 -0.577 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.051 4.051 3 C -0.028 4.028 4 C -0.097 4.097 5 C -0.106 4.106 6 C -0.009 4.009 7 C -0.103 4.103 8 C -0.165 4.165 9 N -0.183 5.183 10 C -0.108 4.108 11 C 0.057 3.943 12 C -0.480 4.480 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.411 5.411 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.198 1.198 19 H -0.182 1.182 20 C -0.197 4.197 21 C 0.082 3.918 22 F -0.103 7.103 23 C -0.127 4.127 24 H 0.155 0.845 25 H 0.164 0.836 26 H 0.138 0.862 27 H 0.170 0.830 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.000 -0.657 0.366 9.031 hybrid contribution 0.682 -0.212 -1.290 1.474 sum -8.318 -0.869 -0.924 8.414 Atomic orbital electron populations 1.81243 1.12003 1.08186 1.08575 1.25593 0.92476 0.93527 0.93493 1.15625 0.84189 0.99999 1.02973 1.21118 0.94100 0.97117 0.97373 1.21164 0.92867 0.98164 0.98395 1.19371 0.94496 0.93057 0.93969 1.19171 0.89134 1.06064 0.95972 1.21823 0.90213 1.09800 0.94634 1.67171 1.07202 1.10986 1.32968 1.23153 0.99735 1.01045 0.86900 1.18460 0.91218 0.89785 0.94877 1.19534 0.97013 1.35546 0.95858 0.89871 1.25979 0.98876 0.92298 0.97284 1.69750 1.19403 1.21717 1.30264 0.86205 0.79158 0.80206 0.80733 1.19379 1.19763 1.18237 1.21356 0.94044 1.09286 0.95042 1.17446 0.88939 0.90295 0.95080 1.91552 1.79993 1.64494 1.74275 1.20933 0.92248 0.99445 1.00083 0.84494 0.83648 0.86191 0.83046 0.90201 0.87430 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.82 18.54 41.84 0.78 -5.04 16 2 C 0.26 3.12 15.32 -22.47 -0.34 2.77 16 3 C -0.02 -0.27 5.74 -106.85 -0.61 -0.88 16 4 C -0.08 -0.80 9.73 -39.23 -0.38 -1.18 16 5 C -0.09 -1.13 9.51 -39.33 -0.37 -1.50 16 6 C -0.01 -0.10 5.50 -104.77 -0.58 -0.68 16 7 C -0.10 -2.05 5.31 -104.83 -0.56 -2.61 16 8 C -0.01 -0.22 10.03 -16.95 -0.17 -0.39 16 9 N -0.48 -11.70 10.32 -12.27 -0.13 -11.83 16 10 C 0.06 1.40 9.89 -16.72 -0.17 1.24 16 11 C 0.06 1.50 5.58 -106.71 -0.60 0.91 16 12 C -0.45 -10.82 9.08 -37.73 -0.34 -11.16 16 13 H 0.08 1.90 7.91 -52.48 -0.41 1.48 16 14 C 0.08 1.72 5.15 -17.35 -0.09 1.63 16 15 N -0.79 -18.76 10.96 55.55 0.61 -18.15 16 16 Si 0.91 17.05 29.59 -169.99 -5.03 12.02 16 17 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 19 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 20 C -0.17 -3.76 9.43 -38.21 -0.36 -4.12 16 21 C 0.10 1.49 7.15 -39.16 -0.28 1.21 16 22 F -0.12 -2.04 15.89 2.25 0.04 -2.01 16 23 C -0.11 -1.23 9.72 -39.15 -0.38 -1.61 16 24 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 25 H 0.15 1.76 8.04 -52.49 -0.42 1.34 16 26 H 0.12 2.42 7.78 -52.49 -0.41 2.01 16 27 H 0.15 3.92 6.15 -52.49 -0.32 3.60 16 28 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 29 H 0.11 2.13 8.06 -52.49 -0.42 1.70 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -26.46 286.10 -6.63 -33.09 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -1.97 Total: 3.99 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.23 Total: -16.38 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 1.26 Total: -35.03 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.46 -6.63 -33.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236530181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.005 kcal (2) G-P(sol) polarization free energy of solvation -26.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds