Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99641 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99709 * 3 2 1 5 5 H 1.48494 * 109.47410 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46946 * 120.00054 * 3 2 1 7 7 C 1.40042 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00266 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99886 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00068 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00262 * 179.97438 * 11 9 7 13 13 C 1.50694 * 109.47479 * 180.02562 * 12 11 9 14 14 N 1.30291 * 126.34286 * 269.69303 * 13 12 11 15 15 N 1.28530 * 110.08132 * 179.82011 * 14 13 12 16 16 C 1.31284 * 109.85329 * 0.45405 * 15 14 13 17 17 S 1.76195 * 126.48463 * 179.73274 * 16 15 14 18 18 N 1.36542 * 107.03046 * 359.72608 * 16 15 14 19 19 C 1.46504 * 127.14086 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49672 * 16.79148 * 19 18 16 21 21 C 1.52999 * 117.50014 * 308.13033 * 19 18 16 22 22 H 0.96996 * 120.00138 * 359.97438 * 1 2 3 23 23 H 0.97001 * 120.00259 * 0.02562 * 11 9 7 24 24 H 1.09003 * 109.47513 * 300.00814 * 12 11 9 25 25 H 1.09004 * 109.46658 * 60.00135 * 12 11 9 26 26 H 1.41007 * 99.99883 * 269.99430 * 17 16 15 27 27 H 1.09005 * 115.54854 * 162.45836 * 19 18 16 28 28 H 1.08990 * 117.50393 * 359.97438 * 20 19 18 29 29 H 1.09001 * 117.49656 * 145.02501 * 20 19 18 30 30 H 1.09001 * 117.50009 * 214.97800 * 21 19 18 31 31 H 1.09000 * 117.49559 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4804 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.1959 -6.0618 0.0016 14 7 2.6933 -6.6528 -1.0476 15 7 3.4995 -7.5868 -0.6873 16 6 3.5529 -7.6488 0.6230 17 16 4.5143 -8.7729 1.5803 18 7 2.7224 -6.6773 1.1035 19 6 2.4521 -6.3598 2.5080 20 6 3.4294 -6.8984 3.5547 21 6 2.0326 -7.5109 3.4244 22 1 -0.4850 0.8400 0.0004 23 1 2.9190 -3.6476 0.0009 24 1 0.5901 -4.9740 0.8913 25 1 0.5896 -4.9743 -0.8887 26 1 3.5925 -9.8315 1.7137 27 1 2.0062 -5.3822 2.6915 28 1 4.2732 -7.4892 3.1986 29 1 3.6261 -6.2753 4.4272 30 1 1.3111 -7.2906 4.2111 31 1 1.9574 -8.5044 2.9822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320380401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 81.020876 kcal Electronic energy + Delta-G solvation = -17814.298286 eV Core-core repulsion = 14839.061457 eV Total energy + Delta-G solvation = -2975.236829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.06633 -37.91993 -37.43264 -33.97565 -32.79566 -32.39779 -30.66725 -27.31481 -25.37202 -24.38017 -22.93441 -22.02814 -20.89812 -19.84242 -18.47573 -17.56370 -16.89399 -16.40971 -15.46424 -15.37317 -14.98633 -14.56171 -14.13658 -13.98446 -13.47485 -13.07171 -12.44487 -12.26866 -12.12274 -11.69292 -11.65111 -11.45621 -11.24783 -11.06043 -10.96183 -10.56124 -10.53138 -10.32100 -9.81608 -9.39328 -8.91630 -8.34883 -7.76021 -7.75177 -6.27192 -4.73280 0.70722 1.14284 2.02132 2.32539 2.74494 3.12734 3.18065 3.19968 3.38182 4.00822 4.06569 4.32415 4.43272 4.48375 4.56188 4.84277 4.88774 5.12600 5.22265 5.47026 5.57261 5.69049 5.76114 5.86825 6.02253 6.16534 6.57595 7.36287 7.70910 7.87775 8.21360 8.50690 8.94206 9.34236 10.47839 10.66090 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.004407 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.562858 B = 6351.751666 C = 6516.468351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.762 5.762 12 C 0.216 3.784 13 C 0.212 3.788 14 N -0.278 5.278 15 N -0.238 5.238 16 C 0.129 3.871 17 S -0.002 6.002 18 N -0.423 5.423 19 C 0.047 3.953 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.270 0.730 23 H 0.384 0.616 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.157 0.843 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -14.267 9.101 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.420 5.420 12 C 0.088 3.912 13 C -0.057 4.057 14 N -0.121 5.121 15 N -0.083 5.083 16 C -0.245 4.245 17 S 0.149 5.851 18 N -0.114 5.114 19 C -0.057 4.057 20 C -0.221 4.221 21 C -0.213 4.213 22 H 0.081 0.919 23 H 0.215 0.785 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.174 0.826 28 H 0.156 0.844 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.832 -14.910 8.128 18.304 hybrid contribution -0.564 0.988 0.789 1.384 sum 6.268 -13.922 8.916 17.680 Atomic orbital electron populations 1.69998 1.07067 1.27602 1.34778 1.25697 0.94651 1.00320 0.92520 0.86395 0.79808 0.80808 0.79552 1.19159 1.20480 1.19262 1.20801 0.93642 0.89020 1.54383 0.91326 1.18249 0.87202 0.81933 0.76428 1.90619 1.13919 1.86406 1.55041 1.46258 1.08829 1.03521 1.83376 1.19287 0.89496 0.78860 1.03524 1.25682 0.99462 0.98877 0.81642 1.74239 1.08700 1.05597 1.23567 1.74785 1.12897 1.13506 1.07074 1.25708 1.03629 1.00271 0.94934 1.86716 1.19991 1.14665 1.63693 1.46420 1.31917 1.25326 1.07742 1.22255 1.07813 1.00630 0.75041 1.24374 0.95349 1.03280 0.99144 1.23433 0.99526 0.96851 1.01500 0.91893 0.78476 0.90974 0.89112 0.93631 0.82596 0.84383 0.86878 0.86651 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.35 11.83 55.55 0.66 -21.69 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.91 19.71 29.56 -169.99 -5.02 14.69 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.54 -14.90 9.54 -35.64 -0.34 -15.24 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 15.27 7.75 -12.99 -0.10 15.17 16 10 O -0.58 -17.93 15.02 5.20 0.08 -17.86 16 11 N -0.76 -16.62 5.54 -62.90 -0.35 -16.97 16 12 C 0.22 4.07 5.96 -5.20 -0.03 4.04 16 13 C 0.21 3.64 7.44 -154.00 -1.15 2.50 16 14 N -0.28 -5.27 12.17 32.99 0.40 -4.87 16 15 N -0.24 -4.19 12.23 30.68 0.38 -3.82 16 16 C 0.13 1.86 8.19 -88.34 -0.72 1.14 16 17 S 0.00 -0.02 21.78 -107.50 -2.34 -2.36 16 18 N -0.42 -6.08 3.16 -106.47 -0.34 -6.41 16 19 C 0.05 0.53 6.62 -67.93 -0.45 0.08 16 20 C -0.18 -1.52 9.71 -26.69 -0.26 -1.78 16 21 C -0.17 -1.44 10.02 -26.69 -0.27 -1.71 16 22 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 23 H 0.38 7.78 8.44 -40.82 -0.34 7.44 16 24 H 0.07 1.30 7.76 -51.93 -0.40 0.90 16 25 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 26 H 0.10 0.77 9.55 96.90 0.93 1.70 16 27 H 0.16 1.82 7.79 -51.93 -0.40 1.41 16 28 H 0.14 1.16 4.38 -28.43 -0.12 1.03 16 29 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.76 7.89 -51.93 -0.41 0.35 16 LS Contribution 289.72 15.07 4.37 4.37 Total: -1.00 -34.20 289.72 -7.16 -41.36 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -1.57 Total: 7.06 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: -3.41 Total: 6.51 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.75 Total: -53.76 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.08 Total: -17.86 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.34 Total: -2.36 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.20 -7.16 -41.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320380401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.376 kcal (2) G-P(sol) polarization free energy of solvation -34.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds