Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99641 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99709 * 3 2 1 5 5 H 1.48494 * 109.47410 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46946 * 120.00054 * 3 2 1 7 7 C 1.40042 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.46371 * 120.00266 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99886 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00068 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00262 * 179.97438 * 11 9 7 13 13 C 1.50694 * 109.47479 * 180.02562 * 12 11 9 14 14 N 1.30291 * 126.34286 * 269.69303 * 13 12 11 15 15 N 1.28530 * 110.08132 * 179.82011 * 14 13 12 16 16 C 1.31284 * 109.85329 * 0.45405 * 15 14 13 17 17 S 1.76195 * 126.48463 * 179.73274 * 16 15 14 18 18 N 1.36542 * 107.03046 * 359.72608 * 16 15 14 19 19 C 1.46504 * 127.14086 * 180.02562 * 18 16 15 20 20 C 1.53002 * 117.49672 * 16.79148 * 19 18 16 21 21 C 1.52999 * 117.50014 * 308.13033 * 19 18 16 22 22 H 0.96996 * 120.00138 * 359.97438 * 1 2 3 23 23 H 0.97001 * 120.00259 * 0.02562 * 11 9 7 24 24 H 1.09003 * 109.47513 * 300.00814 * 12 11 9 25 25 H 1.09004 * 109.46658 * 60.00135 * 12 11 9 26 26 H 1.41007 * 99.99883 * 269.99430 * 17 16 15 27 27 H 1.09005 * 115.54854 * 162.45836 * 19 18 16 28 28 H 1.08990 * 117.50393 * 359.97438 * 20 19 18 29 29 H 1.09001 * 117.49656 * 145.02501 * 20 19 18 30 30 H 1.09001 * 117.50009 * 214.97800 * 21 19 18 31 31 H 1.09000 * 117.49559 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0944 1.6965 1.2126 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4804 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0011 13 6 2.1959 -6.0618 0.0016 14 7 2.6933 -6.6528 -1.0476 15 7 3.4995 -7.5868 -0.6873 16 6 3.5529 -7.6488 0.6230 17 16 4.5143 -8.7729 1.5803 18 7 2.7224 -6.6773 1.1035 19 6 2.4521 -6.3598 2.5080 20 6 3.4294 -6.8984 3.5547 21 6 2.0326 -7.5109 3.4244 22 1 -0.4850 0.8400 0.0004 23 1 2.9190 -3.6476 0.0009 24 1 0.5901 -4.9740 0.8913 25 1 0.5896 -4.9743 -0.8887 26 1 3.5925 -9.8315 1.7137 27 1 2.0062 -5.3822 2.6915 28 1 4.2732 -7.4892 3.1986 29 1 3.6261 -6.2753 4.4272 30 1 1.3111 -7.2906 4.2111 31 1 1.9574 -8.5044 2.9822 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320380401.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 56.280249 kcal Electronic energy + Delta-G solvation = -17815.371120 eV Core-core repulsion = 14839.061457 eV Total energy + Delta-G solvation = -2976.309663 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.29303 -39.47269 -38.77109 -35.75273 -34.55771 -33.87869 -32.17614 -29.15068 -27.13175 -25.48540 -23.66719 -23.10907 -22.23306 -21.70235 -19.65036 -19.17698 -18.01026 -17.68427 -17.39503 -16.61359 -16.13745 -15.90557 -15.80206 -15.39647 -14.82375 -14.52194 -14.10166 -13.60575 -13.19852 -13.16526 -13.08822 -12.82468 -12.71078 -12.65352 -12.28660 -12.06224 -12.01616 -11.58522 -10.92915 -10.75932 -10.67505 -9.92144 -9.68918 -9.12868 -8.31946 -6.89118 -0.24215 0.02705 1.05640 1.22885 1.42018 1.44315 1.56417 1.61895 2.24839 2.43327 2.62231 2.82398 3.11609 3.31101 3.48469 3.66283 3.68241 3.82843 4.10573 4.32242 4.54924 4.57615 4.63062 4.78700 4.98947 5.15442 5.30313 5.45946 5.79067 5.95001 6.17878 6.84303 7.23792 7.36839 8.39881 8.62437 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.004407 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.562858 B = 6351.751666 C = 6516.468351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.033 3.967 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.253 1.253 7 C -0.570 4.570 8 H 0.085 0.915 9 C 0.545 3.455 10 O -0.623 6.623 11 N -0.748 5.748 12 C 0.227 3.773 13 C 0.198 3.802 14 N -0.308 5.308 15 N -0.275 5.275 16 C 0.138 3.862 17 S 0.028 5.972 18 N -0.412 5.412 19 C 0.005 3.995 20 C -0.163 4.163 21 C -0.155 4.155 22 H 0.277 0.723 23 H 0.392 0.608 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.126 0.874 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.877 -14.799 10.984 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.182 4.182 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.177 1.177 7 C -0.607 4.607 8 H 0.103 0.897 9 C 0.350 3.650 10 O -0.510 6.510 11 N -0.405 5.405 12 C 0.100 3.900 13 C -0.072 4.072 14 N -0.151 5.151 15 N -0.119 5.119 16 C -0.237 4.237 17 S 0.178 5.822 18 N -0.102 5.102 19 C -0.098 4.098 20 C -0.202 4.202 21 C -0.193 4.193 22 H 0.087 0.913 23 H 0.225 0.775 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.163 0.837 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.740 -15.486 10.029 20.415 hybrid contribution -1.108 0.963 0.299 1.498 sum 7.631 -14.522 10.327 19.385 Atomic orbital electron populations 1.70150 1.09380 1.29220 1.35822 1.26901 0.95517 1.04705 0.91127 0.85088 0.78258 0.74855 0.80242 1.18248 1.19719 1.17660 1.21330 0.94684 0.89813 1.54827 0.89662 1.18522 0.86810 0.83532 0.76091 1.90576 1.15767 1.87486 1.57158 1.45842 1.09121 1.03572 1.81947 1.19075 0.89649 0.78294 1.03005 1.25057 1.00279 0.99163 0.82668 1.74119 1.09550 1.06468 1.24949 1.74717 1.14002 1.14191 1.09024 1.26460 1.02365 1.00146 0.94689 1.86642 1.19544 1.14180 1.61784 1.46540 1.30842 1.24489 1.08362 1.22597 1.11427 1.01843 0.73981 1.24501 0.95186 1.02523 0.97951 1.23570 0.99971 0.95627 1.00110 0.91345 0.77492 0.90270 0.90862 0.90930 0.83670 0.84157 0.84886 0.84731 0.88486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.70 11.83 21.83 0.26 -48.44 16 2 C 0.03 1.82 5.50 85.30 0.47 2.29 16 3 Si 1.00 40.07 29.56 68.60 2.03 42.10 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.57 -31.71 9.54 24.83 0.24 -31.48 16 8 H 0.09 4.29 7.85 -2.91 -0.02 4.27 16 9 C 0.55 30.84 7.75 86.36 0.67 31.51 16 10 O -0.62 -40.32 15.02 -4.31 -0.06 -40.38 16 11 N -0.75 -33.64 5.54 -471.15 -2.61 -36.25 16 12 C 0.23 8.92 5.96 85.63 0.51 9.43 16 13 C 0.20 6.96 7.44 137.63 1.02 7.98 16 14 N -0.31 -11.95 12.17 -49.53 -0.60 -12.55 16 15 N -0.27 -9.68 12.23 -56.85 -0.70 -10.37 16 16 C 0.14 3.83 8.19 179.55 1.47 5.30 16 17 S 0.03 0.46 21.78 -56.49 -1.23 -0.77 16 18 N -0.41 -11.58 3.16 -490.75 -1.55 -13.13 16 19 C 0.00 0.10 6.62 44.99 0.30 0.39 16 20 C -0.16 -2.20 9.71 30.62 0.30 -1.90 16 21 C -0.15 -2.08 10.02 30.62 0.31 -1.78 16 22 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 23 H 0.39 16.22 8.44 -92.71 -0.78 15.44 16 24 H 0.08 2.98 7.76 -2.39 -0.02 2.96 16 25 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 26 H 0.13 1.45 9.55 73.80 0.70 2.16 16 27 H 0.15 3.34 7.79 -2.38 -0.02 3.33 16 28 H 0.14 1.86 4.38 -17.34 -0.08 1.78 16 29 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.10 1.25 7.89 -2.39 -0.02 1.23 16 Total: -1.00 -76.72 289.72 1.87 -74.85 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.06 Total: 23.19 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 5.28 Total: 21.75 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -5.20 Total: -120.74 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -0.06 Total: -40.38 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 0.46 SS G_CDS: -1.23 Total: -0.77 kcal Total: -76.72 1.87 -74.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320380401.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.133 kcal (2) G-P(sol) polarization free energy of solvation -76.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds