Wall clock time and date at job start Mon Mar 30 2020 01:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47519 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47237 * 300.00099 * 3 2 1 6 6 H 1.48506 * 109.47297 * 59.99640 * 3 2 1 7 7 C 1.37875 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00464 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00115 * 359.97438 * 7 2 1 10 10 O 1.42902 * 110.64325 * 298.31105 * 9 7 2 11 11 C 1.55157 * 110.87328 * 175.06328 * 9 7 2 12 12 C 1.54915 * 101.58291 * 206.06286 * 11 9 7 13 13 N 1.47741 * 104.83898 * 37.09797 * 12 11 9 14 14 C 1.34777 * 125.82156 * 155.82924 * 13 12 11 15 15 O 1.21619 * 120.00286 * 354.78584 * 14 13 12 16 16 C 1.47262 * 119.99749 * 174.78634 * 14 13 12 17 17 N 1.30562 * 125.53954 * 185.39177 * 16 14 13 18 18 C 1.30703 * 115.90693 * 180.02562 * 17 16 14 19 19 C 1.34238 * 115.78182 * 0.02562 * 18 17 16 20 20 S 1.71076 * 109.09040 * 359.72730 * 19 18 17 21 21 C 1.47026 * 108.53078 * 335.74983 * 13 12 11 22 22 H 0.96995 * 119.99929 * 0.02562 * 1 2 3 23 23 H 0.96701 * 113.99612 * 61.69228 * 10 9 7 24 24 H 1.08995 * 111.00758 * 324.13899 * 11 9 7 25 25 H 1.08998 * 111.00206 * 87.95476 * 11 9 7 26 26 H 1.09003 * 110.36337 * 155.84609 * 12 11 9 27 27 H 1.08994 * 110.36682 * 278.17334 * 12 11 9 28 28 H 1.07999 * 122.10930 * 179.97438 * 18 17 16 29 29 H 1.08004 * 125.45440 * 179.97438 * 19 18 17 30 30 H 1.09001 * 109.88013 * 241.68806 * 21 13 12 31 31 H 1.08995 * 109.88459 * 120.67597 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4504 -2.6176 1.1794 11 6 2.2255 -3.7002 -0.1226 12 6 1.3149 -4.7739 -0.7691 13 7 0.4603 -4.0260 -1.7140 14 6 -0.1465 -4.5376 -2.8033 15 8 0.0641 -5.6894 -3.1322 16 6 -1.0646 -3.7019 -3.5954 17 7 -1.7833 -4.1114 -4.6055 18 6 -2.5357 -3.2070 -5.1750 19 6 -2.4697 -1.9751 -4.6459 20 16 -1.3759 -1.9890 -3.3305 21 6 0.3803 -2.6280 -1.2659 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2277 -1.9334 1.2643 24 1 3.0650 -3.4565 -0.7737 25 1 2.5752 -4.0227 0.8581 26 1 1.9163 -5.5091 -1.3039 27 1 0.7052 -5.2618 -0.0087 28 1 -3.1699 -3.4362 -6.0186 29 1 -3.0219 -1.1140 -4.9924 30 1 -0.6533 -2.3719 -1.0332 31 1 0.7595 -1.9667 -2.0449 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326641447.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:46 Heat of formation + Delta-G solvation = -31.141532 kcal Electronic energy + Delta-G solvation = -18613.611367 eV Core-core repulsion = 15601.218060 eV Total energy + Delta-G solvation = -3012.393307 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.85762 -38.97073 -37.19956 -34.33446 -32.38830 -31.05932 -29.82492 -28.01888 -26.19350 -25.10934 -22.96647 -20.92502 -19.80657 -18.93478 -17.93565 -17.24469 -16.22864 -16.01154 -15.37643 -15.10151 -14.68007 -14.27646 -13.95944 -13.26064 -13.13702 -13.10339 -12.94754 -12.28836 -11.80850 -11.71008 -11.35788 -11.12061 -10.74486 -10.72004 -10.54028 -10.34622 -10.12823 -9.47511 -9.43986 -9.34230 -8.83154 -8.69617 -8.47040 -8.10729 -6.44561 -4.52530 0.51159 1.50859 1.98291 2.61682 3.09398 3.16277 3.20503 3.24338 3.56232 4.14604 4.58785 4.83701 5.10315 5.23203 5.44269 5.53581 5.59919 5.74474 5.85627 6.09752 6.16738 6.28535 6.50186 6.63719 6.70604 6.90423 7.14583 7.58134 7.71207 7.82473 7.98669 8.43506 8.53556 9.14163 9.23377 10.63096 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.008203 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.087438 B = 3412.672240 C = 4478.534159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.070 0.930 9 C 0.255 3.745 10 O -0.581 6.581 11 C -0.118 4.118 12 C 0.113 3.887 13 N -0.605 5.605 14 C 0.602 3.398 15 O -0.526 6.526 16 C -0.014 4.014 17 N -0.413 5.413 18 C 0.020 3.980 19 C -0.306 4.306 20 S 0.261 5.739 21 C 0.075 3.925 22 H 0.271 0.729 23 H 0.382 0.618 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.171 0.829 29 H 0.177 0.823 30 H 0.077 0.923 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 0.088 -4.440 5.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.214 3.786 10 O -0.389 6.389 11 C -0.156 4.156 12 C -0.008 4.008 13 N -0.339 5.339 14 C 0.386 3.614 15 O -0.403 6.403 16 C -0.288 4.288 17 N -0.130 5.130 18 C -0.138 4.138 19 C -0.448 4.448 20 S 0.517 5.483 21 C -0.049 4.049 22 H 0.081 0.919 23 H 0.233 0.767 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.188 0.812 29 H 0.194 0.806 30 H 0.095 0.905 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.186 -0.765 -4.012 4.632 hybrid contribution -0.861 1.538 -1.114 2.084 sum -3.046 0.773 -5.125 6.012 Atomic orbital electron populations 1.69680 1.05892 1.27961 1.49915 1.25043 0.95097 0.99701 0.93254 0.86369 0.80253 0.82642 0.77847 1.19530 1.20732 1.20673 1.21563 0.93938 0.89819 1.52051 0.91210 1.19415 0.86217 0.92497 0.80423 1.86160 1.51789 1.56568 1.44419 1.22801 0.97377 0.94825 1.00639 1.22343 0.92477 0.95058 0.90971 1.48642 1.47858 1.13214 1.24170 1.16302 0.79868 0.85548 0.79697 1.90779 1.63288 1.17062 1.69218 1.27517 1.04887 0.95816 1.00620 1.66632 1.05324 1.34807 1.06193 1.21705 1.01338 0.87878 1.02864 1.27281 1.08650 1.03562 1.05258 1.85374 1.31949 1.07924 1.23005 1.23390 1.02458 0.78364 1.00646 0.91939 0.76728 0.90185 0.89991 0.90999 0.91195 0.81172 0.80561 0.90489 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.69 10.96 55.43 0.61 -20.08 16 2 C 0.07 1.68 5.28 -17.82 -0.09 1.59 16 3 Si 0.90 18.69 29.54 -169.99 -5.02 13.67 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.54 -12.67 8.13 -34.44 -0.28 -12.95 16 8 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 9 C 0.26 5.61 0.85 -89.94 -0.08 5.53 16 10 O -0.58 -13.35 13.07 -35.23 -0.46 -13.81 16 11 C -0.12 -2.25 6.23 -24.58 -0.15 -2.40 16 12 C 0.11 2.10 6.94 -2.35 -0.02 2.08 16 13 N -0.60 -12.21 3.34 -171.58 -0.57 -12.78 16 14 C 0.60 12.69 7.84 -12.59 -0.10 12.59 16 15 O -0.53 -12.29 17.32 5.26 0.09 -12.20 16 16 C -0.01 -0.26 7.38 -14.43 -0.11 -0.37 16 17 N -0.41 -7.72 10.60 -11.50 -0.12 -7.84 16 18 C 0.02 0.29 11.24 -19.44 -0.22 0.07 16 19 C -0.31 -4.16 11.09 29.32 0.33 -3.83 16 20 S 0.26 4.30 18.63 -107.50 -2.00 2.30 16 21 C 0.07 1.56 3.55 -3.06 -0.01 1.54 16 22 H 0.27 6.01 8.31 -40.82 -0.34 5.67 16 23 H 0.38 8.83 7.45 45.56 0.34 9.17 16 24 H 0.08 1.45 8.04 -51.93 -0.42 1.04 16 25 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 26 H 0.07 1.25 8.00 -51.93 -0.42 0.83 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 29 H 0.18 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.08 1.64 6.58 -51.93 -0.34 1.30 16 31 H 0.08 1.65 6.71 -51.93 -0.35 1.30 16 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -27.13 278.59 -6.43 -33.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -2.42 Total: 9.13 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -0.73 Total: 3.86 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -0.09 Total: -40.70 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.37 Total: -26.01 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -2.00 Total: 2.30 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.13 -6.43 -33.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326641447.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.422 kcal (2) G-P(sol) polarization free energy of solvation -27.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds