Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99810 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47339 * 300.00186 * 3 2 1 6 6 H 1.48499 * 109.46684 * 60.00134 * 3 2 1 7 7 C 1.38949 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00106 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99526 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00419 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99615 * 180.02562 * 10 9 7 13 13 O 1.45204 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34726 * 117.00114 * 180.02562 * 13 12 10 15 15 O 1.21492 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.47557 * 119.99910 * 180.02562 * 14 13 12 17 17 C 1.40068 * 120.58385 * 0.22370 * 16 14 13 18 18 C 1.38319 * 118.31148 * 180.29216 * 17 16 14 19 19 C 1.38362 * 119.38600 * 359.45934 * 18 17 16 20 20 N 1.31912 * 121.14430 * 0.30109 * 19 18 17 21 21 C 1.31949 * 121.84434 * 359.97438 * 20 19 18 22 22 F 1.35107 * 119.75895 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00323 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.47367 * 59.99841 * 12 10 9 26 26 H 1.09005 * 109.47028 * 299.99774 * 12 10 9 27 27 H 1.08000 * 120.84383 * 0.02837 * 17 16 14 28 28 H 1.08002 * 120.30966 * 179.74235 * 18 17 16 29 29 H 1.07992 * 119.42995 * 180.28248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 8 2.1875 -5.9666 -0.0027 14 6 1.6725 -7.2116 -0.0038 15 8 0.4681 -7.3708 -0.0038 16 6 2.5715 -8.3817 -0.0037 17 6 3.9618 -8.2123 0.0021 18 6 4.7603 -9.3417 -0.0044 19 6 4.1679 -10.5921 -0.0049 20 7 2.8555 -10.7252 -0.0053 21 6 2.0498 -9.6803 -0.0047 22 9 0.7114 -9.8654 -0.0057 23 1 -0.4851 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0005 25 1 0.6168 -4.9201 -0.8919 26 1 0.6176 -4.9213 0.8881 27 1 4.3993 -7.2249 0.0072 28 1 5.8363 -9.2485 -0.0043 29 1 4.7906 -11.4743 -0.0053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326726578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = -120.213428 kcal Electronic energy + Delta-G solvation = -19124.234017 eV Core-core repulsion = 15541.765087 eV Total energy + Delta-G solvation = -3582.468930 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.069 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.23015 -40.78536 -39.77632 -38.15316 -36.17326 -34.05353 -33.32347 -31.54036 -31.39849 -28.51112 -25.47160 -24.52335 -23.79365 -21.51699 -19.64675 -18.42959 -18.15109 -18.00171 -17.53650 -16.70048 -16.40551 -16.03183 -15.79392 -15.31651 -14.65733 -14.14817 -14.10408 -13.96401 -13.64931 -13.43708 -13.19924 -12.81966 -12.39754 -12.06712 -11.66058 -11.18502 -10.77543 -10.51389 -10.45778 -10.42269 -10.34421 -10.13264 -9.65859 -9.46450 -8.58502 -8.12766 -6.53763 -3.96102 0.05782 0.66769 2.34559 2.41388 3.08946 3.14593 3.21645 3.26415 3.28663 3.68573 3.99070 4.07377 4.33870 4.39727 4.53714 4.83186 5.05267 5.11153 5.25988 5.45771 5.52209 5.62069 5.63737 5.98500 6.08478 6.43536 7.11662 7.44252 7.66618 7.90211 8.43460 9.02835 9.34701 9.83823 10.63362 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.044484 B = 0.003575 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.293120 B = 7830.116561 C = 8444.264438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.107 0.893 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.319 6.319 14 C 0.507 3.493 15 O -0.493 6.493 16 C -0.197 4.197 17 C 0.014 3.986 18 C -0.197 4.197 19 C 0.165 3.835 20 N -0.521 5.521 21 C 0.369 3.631 22 F -0.086 7.086 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -16.769 0.001 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.125 0.875 9 N -0.188 5.188 10 C 0.223 3.777 11 O -0.462 6.462 12 C -0.016 4.016 13 O -0.234 6.234 14 C 0.350 3.650 15 O -0.382 6.382 16 C -0.202 4.202 17 C -0.012 4.012 18 C -0.217 4.217 19 C 0.009 3.991 20 N -0.236 5.236 21 C 0.216 3.784 22 F -0.065 7.065 23 H 0.084 0.916 24 H 0.229 0.771 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 6.165 -17.428 0.001 18.487 hybrid contribution -0.394 1.606 0.000 1.653 sum 5.772 -15.822 0.001 16.842 Atomic orbital electron populations 1.69619 1.06019 1.28467 1.49489 1.25333 0.95702 0.99934 0.96824 0.85730 0.79679 0.80689 0.77836 1.19083 1.20593 1.20598 1.19775 0.93504 0.81683 1.48218 0.87512 1.41712 1.09433 1.04083 1.63594 1.19259 0.88304 0.83992 0.86138 1.90550 1.13366 1.86778 1.55485 1.22829 0.90758 0.84116 1.03862 1.86550 1.40120 1.13576 1.83110 1.20617 0.86823 0.83653 0.73953 1.90906 1.15434 1.86798 1.45102 1.19965 0.95132 0.91017 1.14062 1.22122 0.90652 1.01654 0.86753 1.22263 1.02586 0.92622 1.04193 1.22882 0.88521 0.98164 0.89566 1.67227 1.06404 1.32602 1.17369 1.18137 0.79583 0.87895 0.92835 1.91743 1.26981 1.95822 1.91933 0.91614 0.77098 0.89226 0.89235 0.81453 0.82721 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.76 13.05 55.50 0.72 -23.03 15 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.35 15 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 15 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 15 9 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 15 10 C 0.44 10.27 7.86 -10.98 -0.09 10.19 15 11 O -0.58 -15.45 16.08 -14.11 -0.23 -15.68 15 12 C 0.06 1.15 5.95 36.01 0.21 1.36 15 13 O -0.32 -5.74 9.08 -47.24 -0.43 -6.17 15 14 C 0.51 8.32 7.90 34.53 0.27 8.59 15 15 O -0.49 -9.07 15.16 -19.26 -0.29 -9.36 15 16 C -0.20 -2.62 5.90 -104.77 -0.62 -3.24 15 17 C 0.01 0.14 9.74 -38.87 -0.38 -0.24 15 18 C -0.20 -1.39 10.09 -39.51 -0.40 -1.79 15 19 C 0.16 1.24 11.17 -17.47 -0.20 1.05 15 20 N -0.52 -6.00 10.36 -13.20 -0.14 -6.13 15 21 C 0.37 4.97 8.42 -16.86 -0.14 4.83 15 22 F -0.09 -1.31 15.59 2.25 0.04 -1.28 15 23 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 24 H 0.40 9.32 7.90 -40.82 -0.32 9.00 15 25 H 0.09 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.09 1.52 8.14 -51.93 -0.42 1.10 15 27 H 0.17 1.68 7.70 -52.49 -0.40 1.28 15 28 H 0.16 0.58 8.06 -52.49 -0.42 0.15 15 29 H 0.18 0.62 8.06 -52.49 -0.42 0.19 15 LS Contribution 281.14 15.07 4.24 4.24 Total: -1.00 -32.86 281.14 -4.67 -37.53 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -1.93 Total: 5.31 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: -1.57 Total: 12.95 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.53 Total: -42.89 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.95 Total: -31.22 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.86 -4.67 -37.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326726578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.679 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds