Wall clock time and date at job start Mon Mar 30 2020 00:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 119.99810 * 2 1 4 4 H 1.48493 * 109.47058 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47339 * 300.00186 * 3 2 1 6 6 H 1.48499 * 109.46684 * 60.00134 * 3 2 1 7 7 C 1.38949 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00106 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.34781 * 119.99526 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00419 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99615 * 180.02562 * 10 9 7 13 13 O 1.45204 * 109.47064 * 180.02562 * 12 10 9 14 14 C 1.34726 * 117.00114 * 180.02562 * 13 12 10 15 15 O 1.21492 * 120.00152 * 359.97438 * 14 13 12 16 16 C 1.47557 * 119.99910 * 180.02562 * 14 13 12 17 17 C 1.40068 * 120.58385 * 0.22370 * 16 14 13 18 18 C 1.38319 * 118.31148 * 180.29216 * 17 16 14 19 19 C 1.38362 * 119.38600 * 359.45934 * 18 17 16 20 20 N 1.31912 * 121.14430 * 0.30109 * 19 18 17 21 21 C 1.31949 * 121.84434 * 359.97438 * 20 19 18 22 22 F 1.35107 * 119.75895 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00380 * 0.02562 * 1 2 3 24 24 H 0.96997 * 120.00323 * 0.02562 * 9 7 2 25 25 H 1.09002 * 109.47367 * 59.99841 * 12 10 9 26 26 H 1.09005 * 109.47028 * 299.99774 * 12 10 9 27 27 H 1.08000 * 120.84383 * 0.02837 * 17 16 14 28 28 H 1.08002 * 120.30966 * 179.74235 * 18 17 16 29 29 H 1.07992 * 119.42995 * 180.28248 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2439 -4.8629 -0.0022 13 8 2.1875 -5.9666 -0.0027 14 6 1.6725 -7.2116 -0.0038 15 8 0.4681 -7.3708 -0.0038 16 6 2.5715 -8.3817 -0.0037 17 6 3.9618 -8.2123 0.0021 18 6 4.7603 -9.3417 -0.0044 19 6 4.1679 -10.5921 -0.0049 20 7 2.8555 -10.7252 -0.0053 21 6 2.0498 -9.6803 -0.0047 22 9 0.7114 -9.8654 -0.0057 23 1 -0.4851 0.8400 -0.0004 24 1 0.3534 -2.3907 -0.0005 25 1 0.6168 -4.9201 -0.8919 26 1 0.6176 -4.9213 0.8881 27 1 4.3993 -7.2249 0.0072 28 1 5.8363 -9.2485 -0.0043 29 1 4.7906 -11.4743 -0.0053 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326726578.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:37 Heat of formation + Delta-G solvation = -143.015234 kcal Electronic energy + Delta-G solvation = -19125.222777 eV Core-core repulsion = 15541.765087 eV Total energy + Delta-G solvation = -3583.457691 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.069 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.26276 -41.92421 -40.85324 -39.98014 -37.60876 -36.04637 -34.19298 -33.42481 -32.32454 -30.10996 -26.90800 -25.93090 -24.68932 -22.68866 -21.47008 -20.09732 -19.47092 -19.08608 -18.61906 -17.96477 -17.64067 -17.48154 -17.19892 -16.59435 -16.08060 -15.81740 -15.75013 -15.05018 -14.82275 -14.38478 -14.37185 -13.98351 -13.88529 -13.57498 -13.49610 -12.95095 -12.47122 -12.10609 -11.99899 -11.97265 -11.59379 -11.31534 -10.98644 -10.53333 -10.26256 -10.13097 -8.53175 -6.03992 -0.82448 -0.11610 1.11184 1.21547 1.34564 1.44123 1.58628 1.84895 2.25638 2.30512 2.44065 2.91437 3.12383 3.22081 3.45944 3.68002 3.82794 3.96725 4.10910 4.18702 4.27844 4.55538 4.78292 4.91092 5.07362 5.36684 5.38387 5.87493 6.34306 6.37358 6.48366 7.01511 7.38134 7.90481 8.63994 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.044484 B = 0.003575 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.293120 B = 7830.116561 C = 8444.264438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.439 3.561 11 O -0.614 6.614 12 C 0.071 3.929 13 O -0.329 6.329 14 C 0.509 3.491 15 O -0.521 6.521 16 C -0.218 4.218 17 C 0.007 3.993 18 C -0.170 4.170 19 C 0.176 3.824 20 N -0.537 5.537 21 C 0.350 3.650 22 F -0.107 7.107 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.167 0.833 28 H 0.200 0.800 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.047 -17.617 0.000 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.823 3.177 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.226 3.774 11 O -0.501 6.501 12 C -0.006 4.006 13 O -0.244 6.244 14 C 0.353 3.647 15 O -0.411 6.411 16 C -0.223 4.223 17 C -0.018 4.018 18 C -0.189 4.189 19 C 0.021 3.979 20 N -0.252 5.252 21 C 0.196 3.804 22 F -0.086 7.086 23 H 0.090 0.910 24 H 0.234 0.766 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.184 0.816 28 H 0.218 0.782 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 7.904 -18.291 0.000 19.926 hybrid contribution -0.825 1.740 0.001 1.926 sum 7.078 -16.551 0.001 18.001 Atomic orbital electron populations 1.69681 1.07020 1.29695 1.49192 1.26163 0.96591 1.02711 0.95670 0.84771 0.78129 0.76473 0.78361 1.19358 1.19548 1.19560 1.19774 0.92999 0.83224 1.50517 0.89507 1.41754 1.09608 1.04213 1.63945 1.19957 0.88064 0.85145 0.84255 1.90515 1.15171 1.87621 1.56745 1.22608 0.90166 0.82233 1.05623 1.86543 1.40196 1.14117 1.83556 1.21162 0.87107 0.83560 0.72829 1.90881 1.16679 1.86920 1.46641 1.19871 0.96026 0.89496 1.16888 1.22271 0.89509 1.03034 0.86976 1.22744 1.04367 0.91006 1.00752 1.23811 0.87354 1.00211 0.86529 1.67335 1.08085 1.31838 1.17977 1.18282 0.79221 0.88466 0.94394 1.91679 1.28630 1.95950 1.92351 0.90980 0.76585 0.87416 0.87423 0.81576 0.78249 0.75962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.34 13.05 21.66 0.28 -48.05 15 2 C -0.01 -0.56 5.50 84.93 0.47 -0.09 15 3 Si 1.00 41.44 29.55 68.60 2.03 43.47 15 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 15 6 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 7 C -0.34 -18.56 9.68 84.04 0.81 -17.75 15 8 H 0.09 5.06 7.16 -2.91 -0.02 5.04 15 9 N -0.56 -28.22 5.29 -306.98 -1.62 -29.84 15 10 C 0.44 20.97 7.86 87.66 0.69 21.66 15 11 O -0.61 -33.60 16.08 15.74 0.25 -33.35 15 12 C 0.07 2.65 5.95 71.24 0.42 3.08 15 13 O -0.33 -11.98 9.08 -49.98 -0.45 -12.44 15 14 C 0.51 17.00 7.90 70.28 0.56 17.56 15 15 O -0.52 -19.65 15.16 19.86 0.30 -19.35 15 16 C -0.22 -5.77 5.90 -19.96 -0.12 -5.88 15 17 C 0.01 0.14 9.74 22.73 0.22 0.36 15 18 C -0.17 -1.69 10.09 22.32 0.23 -1.47 15 19 C 0.18 1.94 11.17 84.71 0.95 2.89 15 20 N -0.54 -11.35 10.36 -195.67 -2.03 -13.38 15 21 C 0.35 9.36 8.42 85.09 0.72 10.08 15 22 F -0.11 -3.39 15.59 44.97 0.70 -2.69 15 23 H 0.28 13.79 8.31 -92.71 -0.77 13.02 15 24 H 0.40 19.16 7.90 -92.71 -0.73 18.43 15 25 H 0.11 3.65 8.14 -2.39 -0.02 3.63 15 26 H 0.11 3.65 8.14 -2.38 -0.02 3.63 15 27 H 0.17 3.15 7.70 -2.91 -0.02 3.13 15 28 H 0.20 0.26 8.06 -2.91 -0.02 0.24 15 29 H 0.22 0.23 8.06 -2.91 -0.02 0.21 15 Total: -1.00 -73.34 281.14 4.89 -68.45 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.49 Total: 16.76 kcal Atomic # 6 Polarization: 25.49 SS G_CDS: 4.94 Total: 30.43 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.37 Total: -91.28 kcal Atomic # 8 Polarization: -65.24 SS G_CDS: 0.10 Total: -65.14 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.70 Total: -2.69 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -73.34 4.89 -68.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326726578.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.564 kcal (2) G-P(sol) polarization free energy of solvation -73.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds