Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.21444 * 119.99604 * 359.97438 * 16 15 14 18 18 C 1.41228 * 119.99843 * 179.97438 * 16 15 14 19 19 C 1.37180 * 125.47992 * 179.97438 * 18 16 15 20 20 C 1.37207 * 113.24359 * 180.02562 * 19 18 16 21 21 C 1.34021 * 115.14732 * 0.02562 * 20 19 18 22 22 S 1.70610 * 110.99555 * 359.72084 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.08008 * 123.37937 * 359.96960 * 19 18 16 30 30 H 1.07997 * 122.42388 * 180.02562 * 20 19 18 31 31 H 1.07993 * 124.49958 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 8 1.0632 0.6627 4.8159 18 6 2.1431 -0.8649 6.1141 19 6 1.7869 -0.3595 7.3387 20 6 2.2962 -1.0789 8.3902 21 6 3.0442 -2.1368 8.0473 22 16 3.1433 -2.2914 6.3511 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 1.1685 0.5172 7.4627 30 1 2.1079 -0.8120 9.4196 31 1 3.5170 -2.8055 8.7512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327995332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -90.641085 kcal Electronic energy + Delta-G solvation = -17347.476899 eV Core-core repulsion = 14300.210747 eV Total energy + Delta-G solvation = -3047.266152 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.11917 -39.20726 -37.54786 -35.63648 -33.88270 -31.24624 -30.56253 -28.43083 -25.22207 -25.14054 -23.05661 -21.30091 -19.92377 -19.40793 -17.76072 -16.84160 -16.27598 -16.12861 -15.94526 -15.67948 -14.79446 -14.59305 -14.36613 -13.77538 -13.20882 -13.10562 -12.77141 -12.53686 -12.50363 -12.08459 -11.52093 -11.21627 -11.02995 -10.81909 -10.68172 -10.35733 -10.20115 -10.07229 -9.93981 -9.21184 -9.16338 -9.04097 -8.93878 -8.43710 -6.09145 -4.15236 0.00639 1.17132 1.56980 1.91573 2.70622 3.11885 3.24726 3.33520 3.36267 3.42058 4.18934 4.43524 4.60245 4.94689 5.04620 5.13409 5.21243 5.24327 5.26783 5.61093 5.85266 5.95532 6.05029 6.69870 6.89946 6.90379 7.13509 7.39344 7.45560 7.75815 7.95381 8.14578 8.78479 8.92915 9.50087 10.98188 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.046839 B = 0.003755 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.646129 B = 7454.378797 C = 7961.484814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.515 4.515 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.516 6.516 14 O -0.344 6.344 15 C 0.014 3.986 16 C 0.422 3.578 17 O -0.422 6.422 18 C -0.300 4.300 19 C -0.043 4.043 20 C -0.157 4.157 21 C -0.227 4.227 22 S 0.233 5.767 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.097 0.903 26 H 0.264 0.736 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.155 0.845 30 H 0.146 0.854 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.034 -4.809 20.599 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.084 0.916 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.734 3.266 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.262 6.262 15 C -0.062 4.062 16 C 0.298 3.702 17 O -0.297 6.297 18 C -0.419 4.419 19 C -0.077 4.077 20 C -0.188 4.188 21 C -0.365 4.365 22 S 0.501 5.499 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.173 0.827 30 H 0.164 0.836 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.525 -5.522 19.444 20.518 hybrid contribution -0.179 0.281 0.443 0.554 sum 3.346 -5.242 19.887 20.837 Atomic orbital electron populations 1.21744 0.95457 1.00079 1.01959 1.18784 0.94997 0.97054 0.85117 0.91607 1.21090 1.32116 1.13319 0.88741 0.90642 1.24944 0.94882 0.95016 0.99125 1.69878 1.36335 1.22751 1.23997 0.86417 0.79269 0.79645 0.81298 1.21210 1.20071 1.20082 1.25554 0.76482 0.83257 0.83717 1.90494 1.36456 1.26732 1.86632 1.86751 1.69973 1.54866 1.14602 1.23085 1.00767 0.97100 0.85243 1.19818 0.78757 0.84064 0.87607 1.90637 1.28200 1.21675 1.89158 1.24013 1.13194 1.05755 0.98898 1.21034 0.97188 0.99571 0.89867 1.20066 1.01179 0.96596 1.00991 1.25575 1.05631 1.03700 1.01602 1.83336 1.44799 1.22986 0.98772 0.94991 0.95527 0.88489 0.92594 0.88434 0.88421 0.82704 0.83623 0.81211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.90 37.16 0.33 -2.96 16 2 C 0.06 1.55 2.74 -92.93 -0.25 1.29 16 3 H 0.07 1.77 8.14 -51.92 -0.42 1.35 16 4 C -0.51 -14.56 8.37 -34.44 -0.29 -14.85 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.47 11.14 7.25 36.00 0.26 11.40 16 13 O -0.52 -12.97 15.21 -18.75 -0.29 -13.26 16 14 O -0.34 -7.30 9.66 -45.89 -0.44 -7.74 16 15 C 0.01 0.22 5.24 36.01 0.19 0.41 16 16 C 0.42 6.41 7.01 -33.17 -0.23 6.17 16 17 O -0.42 -7.76 16.88 -14.23 -0.24 -8.00 16 18 C -0.30 -3.53 6.23 -38.83 -0.24 -3.78 16 19 C -0.04 -0.44 9.95 -40.34 -0.40 -0.84 16 20 C -0.16 -1.22 10.14 -41.44 -0.42 -1.64 16 21 C -0.23 -1.62 10.93 29.25 0.32 -1.30 16 22 S 0.23 2.06 22.42 -107.50 -2.41 -0.35 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.03 0.59 8.11 -51.93 -0.42 0.16 16 25 H 0.10 2.53 6.07 -51.93 -0.32 2.22 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.10 1.45 8.13 -51.93 -0.42 1.03 16 28 H 0.10 1.45 8.13 -51.93 -0.42 1.02 16 29 H 0.16 1.47 8.02 -52.48 -0.42 1.05 16 30 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.17 0.75 8.06 -52.49 -0.42 0.32 16 LS Contribution 294.34 15.07 4.44 4.44 Total: -1.00 -32.01 294.34 -7.35 -39.36 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -3.18 Total: -2.04 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.83 Total: -4.46 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.63 Total: -24.46 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.97 Total: -29.00 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.41 Total: -0.35 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.01 -7.35 -39.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.281 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds