Wall clock time and date at job start Mon Mar 30 2020 00:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.21444 * 119.99604 * 359.97438 * 16 15 14 18 18 C 1.41228 * 119.99843 * 179.97438 * 16 15 14 19 19 C 1.37180 * 125.47992 * 179.97438 * 18 16 15 20 20 C 1.37207 * 113.24359 * 180.02562 * 19 18 16 21 21 C 1.34021 * 115.14732 * 0.02562 * 20 19 18 22 22 S 1.70610 * 110.99555 * 359.72084 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 28 28 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 29 29 H 1.08008 * 123.37937 * 359.96960 * 19 18 16 30 30 H 1.07997 * 122.42388 * 180.02562 * 20 19 18 31 31 H 1.07993 * 124.49958 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 8 1.0632 0.6627 4.8159 18 6 2.1431 -0.8649 6.1141 19 6 1.7869 -0.3595 7.3387 20 6 2.2962 -1.0789 8.3902 21 6 3.0442 -2.1368 8.0473 22 16 3.1433 -2.2914 6.3511 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 1.8643 -2.0126 3.5570 28 1 3.3172 -0.9843 3.5566 29 1 1.1685 0.5172 7.4627 30 1 2.1079 -0.8120 9.4196 31 1 3.5170 -2.8055 8.7512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327995332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:16 Heat of formation + Delta-G solvation = -108.498836 kcal Electronic energy + Delta-G solvation = -17348.251269 eV Core-core repulsion = 14300.210747 eV Total energy + Delta-G solvation = -3048.040522 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.060 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.66094 -40.59761 -38.40304 -37.38376 -35.94884 -32.82450 -32.08004 -29.54511 -27.30201 -26.12487 -24.81619 -22.37350 -21.67158 -20.23361 -18.87778 -18.69477 -17.95246 -17.76104 -17.45908 -16.82473 -16.39522 -16.05273 -15.59174 -15.11893 -14.75796 -14.34013 -13.91737 -13.75348 -13.69434 -13.44059 -13.20331 -12.98442 -12.79397 -12.63020 -12.32270 -12.05126 -11.91170 -11.86812 -11.31973 -11.14032 -10.97677 -10.54373 -9.97577 -9.61323 -8.20215 -6.34757 -0.82002 0.43833 0.89549 1.05995 1.33682 1.42921 1.46158 1.51815 1.63127 1.82776 2.42951 2.93851 3.09830 3.86038 3.93299 4.02665 4.13055 4.20943 4.31125 4.50362 4.65342 4.86774 4.94495 4.98645 5.17137 5.26185 5.32392 5.39391 5.66037 5.84929 6.06373 6.25627 6.71576 6.93508 7.34237 8.86447 Molecular weight = 268.06amu Principal moments of inertia in cm(-1) A = 0.046839 B = 0.003755 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.646129 B = 7454.378797 C = 7961.484814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 H 0.049 0.951 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.968 3.032 9 H -0.275 1.275 10 H -0.272 1.272 11 H -0.271 1.271 12 C 0.474 3.526 13 O -0.532 6.532 14 O -0.352 6.352 15 C 0.004 3.996 16 C 0.432 3.568 17 O -0.471 6.471 18 C -0.345 4.345 19 C -0.033 4.033 20 C -0.166 4.166 21 C -0.200 4.200 22 S 0.247 5.753 23 H 0.032 0.968 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.269 0.731 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.153 0.847 30 H 0.176 0.824 31 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -6.202 22.311 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 H 0.067 0.933 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.793 3.207 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.197 1.197 12 C 0.319 3.681 13 O -0.421 6.421 14 O -0.269 6.269 15 C -0.071 4.071 16 C 0.312 3.688 17 O -0.350 6.350 18 C -0.463 4.463 19 C -0.068 4.068 20 C -0.196 4.196 21 C -0.338 4.338 22 S 0.515 5.485 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.171 0.829 30 H 0.193 0.807 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.322 -6.922 21.178 22.696 hybrid contribution -0.376 0.671 0.113 0.777 sum 3.945 -6.251 21.291 22.538 Atomic orbital electron populations 1.21573 0.94514 1.00030 1.01828 1.18705 0.95868 0.96225 0.86098 0.93284 1.21232 1.32875 1.13466 0.90210 0.92021 1.25710 0.94810 0.95634 1.01765 1.69973 1.36576 1.23488 1.24902 0.85454 0.78766 0.78638 0.77873 1.20024 1.19710 1.19658 1.24947 0.76124 0.82716 0.84325 1.90468 1.37131 1.27325 1.87172 1.86675 1.69928 1.55404 1.14906 1.23548 1.01843 0.97666 0.84016 1.19880 0.77552 0.83125 0.88254 1.90618 1.30906 1.23805 1.89644 1.23732 1.16514 1.08393 0.97654 1.21295 0.96093 0.99304 0.90059 1.20312 1.01136 0.96454 1.01689 1.26072 1.03568 1.03105 1.01017 1.83316 1.43687 1.21134 1.00364 0.94885 0.93933 0.90187 0.92203 0.86869 0.86864 0.82899 0.80715 0.77654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.90 71.98 0.64 -5.42 16 2 C 0.05 2.67 2.74 -12.29 -0.03 2.64 16 3 H 0.05 2.75 8.14 -2.38 -0.02 2.73 16 4 C -0.54 -31.07 8.37 25.60 0.21 -30.85 16 5 H 0.06 3.65 6.76 -2.91 -0.02 3.63 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -51.64 11.32 21.45 0.24 -51.40 16 8 Si 0.97 44.01 29.54 68.60 2.03 46.03 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 C 0.47 23.09 7.25 71.24 0.52 23.61 16 13 O -0.53 -27.02 15.21 21.98 0.33 -26.68 16 14 O -0.35 -15.19 9.66 -45.04 -0.43 -15.63 16 15 C 0.00 0.12 5.24 71.24 0.37 0.50 16 16 C 0.43 13.29 7.01 26.42 0.19 13.48 16 17 O -0.47 -17.93 16.88 15.24 0.26 -17.67 16 18 C -0.35 -7.82 6.23 22.76 0.14 -7.68 16 19 C -0.03 -0.61 9.95 21.78 0.22 -0.39 16 20 C -0.17 -2.00 10.14 21.07 0.21 -1.79 16 21 C -0.20 -2.03 10.93 66.86 0.73 -1.30 16 22 S 0.25 3.78 22.42 -56.49 -1.27 2.52 16 23 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.92 8.11 -2.39 -0.02 1.90 16 25 H 0.08 4.26 6.07 -2.39 -0.01 4.24 16 26 H 0.27 14.34 8.31 -92.71 -0.77 13.56 16 27 H 0.11 3.33 8.13 -2.39 -0.02 3.31 16 28 H 0.11 3.33 8.13 -2.39 -0.02 3.31 16 29 H 0.15 2.82 8.02 -2.91 -0.02 2.80 16 30 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 31 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -69.71 294.34 5.96 -63.76 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.15 Total: 4.67 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 3.65 Total: -5.61 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.24 Total: -51.40 kcal Atomic # 8 Polarization: -60.13 SS G_CDS: 0.16 Total: -59.98 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.27 Total: 2.52 kcal Total: -69.71 5.96 -63.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327995332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.740 kcal (2) G-P(sol) polarization free energy of solvation -69.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds