Wall clock time and date at job start Mon Mar 30 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00852 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00228 * 3 2 1 6 6 H 1.48494 * 109.47496 * 150.00382 * 3 2 1 7 7 C 1.40304 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00492 * 189.78647 * 7 2 1 9 9 C 1.40541 * 119.99774 * 9.78715 * 7 2 1 10 10 C 1.44183 * 123.71761 * 23.62000 * 9 7 2 11 11 C 1.32767 * 114.43166 * 180.31194 * 10 9 7 12 12 S 1.75467 * 111.36254 * 359.74127 * 11 10 9 13 13 C 1.39544 * 123.71267 * 203.44165 * 9 7 2 14 14 C 1.46235 * 125.22967 * 359.97275 * 13 9 7 15 15 O 1.21761 * 120.00361 * 359.71912 * 14 13 9 16 16 N 1.34778 * 120.00098 * 179.45176 * 14 13 9 17 17 C 1.46505 * 120.00012 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46916 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.46992 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00111 * 180.02562 * 19 18 17 21 21 O 1.21279 * 119.99943 * 0.02562 * 19 18 17 22 22 H 0.97003 * 120.00034 * 359.97438 * 1 2 3 23 23 H 1.08004 * 122.78479 * 0.05552 * 10 9 7 24 24 H 1.08003 * 124.31759 * 179.77126 * 11 10 9 25 25 H 0.97003 * 119.99958 * 359.97438 * 16 14 13 26 26 H 1.08994 * 109.47051 * 299.99592 * 17 16 14 27 27 H 1.08998 * 109.47233 * 59.99571 * 17 16 14 28 28 H 1.09001 * 109.47174 * 299.99621 * 18 17 16 29 29 H 1.08998 * 109.47103 * 60.00002 * 18 17 16 30 30 H 0.97004 * 119.99936 * 0.02562 * 20 19 18 31 31 H 0.96993 * 120.00483 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4402 0.6999 7 6 2.0080 -1.2150 -0.0005 8 1 3.0762 -1.2220 0.1584 9 6 1.3206 -2.4232 -0.2080 10 6 0.0552 -2.5167 -0.8928 11 6 -0.4327 -3.7485 -0.9792 12 16 0.6384 -4.9147 -0.2232 13 6 1.7894 -3.6649 0.2230 14 6 3.0431 -3.8903 0.9412 15 8 3.7724 -2.9509 1.2027 16 7 3.3890 -5.1371 1.3184 17 6 4.6448 -5.3628 2.0383 18 6 4.7951 -6.8540 2.3464 19 6 6.0865 -7.0861 3.0875 20 7 6.4323 -8.3329 3.4648 21 8 6.8147 -6.1509 3.3445 22 1 -0.4850 0.8401 0.0004 23 1 -0.4555 -1.6557 -1.2980 24 1 -1.3691 -4.0005 -1.4547 25 1 2.8060 -5.8850 1.1138 26 1 5.4811 -5.0327 1.4223 27 1 4.6354 -4.7986 2.9709 28 1 3.9586 -7.1838 2.9626 29 1 4.8043 -7.4184 1.4140 30 1 5.8500 -9.0809 3.2590 31 1 7.2637 -8.4824 3.9415 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329299834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:31 Heat of formation + Delta-G solvation = -66.740850 kcal Electronic energy + Delta-G solvation = -17380.875937 eV Core-core repulsion = 14366.938928 eV Total energy + Delta-G solvation = -3013.937009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.62093 -38.18102 -36.06273 -34.20332 -33.78678 -33.04240 -30.51204 -28.87584 -26.30122 -23.80983 -21.93509 -20.52839 -19.98419 -18.75276 -17.82114 -17.06146 -16.84065 -15.77837 -15.71757 -15.39760 -14.53210 -14.14156 -14.05306 -13.67952 -13.40169 -12.83310 -12.44651 -12.04825 -11.81560 -11.65257 -11.48125 -11.26122 -11.09960 -10.87978 -10.40973 -10.11801 -10.10085 -9.86507 -9.62454 -9.25301 -8.41359 -8.21284 -7.47663 -7.13425 -7.02909 -4.51166 2.17306 2.53801 2.98533 3.02202 3.11164 3.13174 3.29562 3.64918 3.82113 3.88168 4.25156 4.47726 4.75319 5.08774 5.09500 5.28748 5.46789 6.04119 6.18735 6.25618 6.59395 6.71031 6.86039 7.13015 7.17753 7.21371 7.32064 7.48742 7.72229 8.12989 8.38589 8.47046 8.62217 8.80809 9.62965 9.88202 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.005080 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.801714 B = 5510.070995 C = 6748.011688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.377 4.377 8 H 0.112 0.888 9 C 0.140 3.860 10 C -0.098 4.098 11 C -0.206 4.206 12 S -0.054 6.054 13 C -0.430 4.430 14 C 0.600 3.400 15 O -0.560 6.560 16 N -0.754 5.754 17 C 0.143 3.857 18 C -0.154 4.154 19 C 0.521 3.479 20 N -0.860 5.860 21 O -0.536 6.536 22 H 0.288 0.712 23 H 0.145 0.855 24 H 0.137 0.863 25 H 0.388 0.612 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.401 0.599 31 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.613 -12.041 1.709 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.176 1.176 7 C -0.408 4.408 8 H 0.130 0.870 9 C 0.129 3.871 10 C -0.130 4.130 11 C -0.340 4.340 12 S 0.201 5.799 13 C -0.549 4.549 14 C 0.397 3.603 15 O -0.443 6.443 16 N -0.408 5.408 17 C 0.018 3.982 18 C -0.195 4.195 19 C 0.306 3.694 20 N -0.424 5.424 21 O -0.411 6.411 22 H 0.099 0.901 23 H 0.163 0.837 24 H 0.155 0.845 25 H 0.221 0.779 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.229 0.771 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.221 -12.006 2.179 12.620 hybrid contribution -0.169 1.154 -0.166 1.178 sum 3.052 -10.852 2.013 11.451 Atomic orbital electron populations 1.69670 1.08089 1.30368 1.32156 1.26382 0.94938 1.02612 0.91493 0.86009 0.80905 0.78718 0.79631 1.18905 1.19966 1.17643 1.20073 0.97843 0.88791 1.34051 0.86995 1.17937 0.89529 0.91839 0.87831 1.21737 0.96325 0.96065 0.98870 1.24928 1.03328 0.96970 1.08768 1.82609 1.17960 1.14281 1.65097 1.22565 1.04995 0.95586 1.31760 1.16832 0.84626 0.81125 0.77751 1.90676 1.53708 1.41561 1.58345 1.45820 1.22898 1.09698 1.62360 1.20743 0.87725 0.91990 0.97725 1.21845 0.95911 0.99941 1.01765 1.20552 0.87720 0.82636 0.78531 1.43891 1.27033 1.09217 1.62261 1.90795 1.53431 1.41891 1.55015 0.90104 0.83725 0.84502 0.77870 0.91518 0.91505 0.88226 0.88234 0.77099 0.76980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.96 10.82 55.57 0.60 -18.36 16 2 C 0.07 1.66 5.39 -17.28 -0.09 1.57 16 3 Si 0.92 18.84 29.57 -169.99 -5.03 13.81 16 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.25 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.38 -10.32 8.52 -37.94 -0.32 -10.64 16 8 H 0.11 3.24 6.03 -52.49 -0.32 2.92 16 9 C 0.14 3.77 5.67 -106.21 -0.60 3.16 16 10 C -0.10 -2.38 9.04 -39.12 -0.35 -2.73 16 11 C -0.21 -4.46 11.07 28.86 0.32 -4.14 16 12 S -0.05 -1.14 22.25 -107.50 -2.39 -3.53 16 13 C -0.43 -10.97 6.51 -35.88 -0.23 -11.21 16 14 C 0.60 15.03 7.76 -13.05 -0.10 14.93 16 15 O -0.56 -15.93 14.45 5.13 0.07 -15.85 16 16 N -0.75 -14.64 5.55 -61.75 -0.34 -14.98 16 17 C 0.14 2.46 4.96 -4.04 -0.02 2.44 16 18 C -0.15 -1.73 5.81 -27.88 -0.16 -1.89 16 19 C 0.52 6.27 8.10 -10.98 -0.09 6.18 16 20 N -0.86 -6.15 8.87 31.22 0.28 -5.87 16 21 O -0.54 -9.20 16.82 5.56 0.09 -9.10 16 22 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 23 H 0.15 3.50 6.41 -52.48 -0.34 3.16 16 24 H 0.14 2.49 8.06 -52.48 -0.42 2.07 16 25 H 0.39 6.56 7.55 -40.82 -0.31 6.25 16 26 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.40 1.54 8.83 -40.82 -0.36 1.18 16 31 H 0.40 2.51 8.93 -40.82 -0.36 2.15 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -33.31 289.08 -6.95 -40.26 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -2.93 Total: 11.60 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.66 Total: -2.33 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.54 Total: -39.21 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: 0.17 Total: -24.96 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.39 Total: -3.53 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.31 -6.95 -40.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329299834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.483 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds