Wall clock time and date at job start Mon Mar 30 2020 01:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86801 * 120.00141 * 2 1 4 4 H 1.48500 * 109.47114 * 270.00852 * 3 2 1 5 5 H 1.48503 * 109.46890 * 30.00228 * 3 2 1 6 6 H 1.48494 * 109.47496 * 150.00382 * 3 2 1 7 7 C 1.40304 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00492 * 189.78647 * 7 2 1 9 9 C 1.40541 * 119.99774 * 9.78715 * 7 2 1 10 10 C 1.44183 * 123.71761 * 23.62000 * 9 7 2 11 11 C 1.32767 * 114.43166 * 180.31194 * 10 9 7 12 12 S 1.75467 * 111.36254 * 359.74127 * 11 10 9 13 13 C 1.39544 * 123.71267 * 203.44165 * 9 7 2 14 14 C 1.46235 * 125.22967 * 359.97275 * 13 9 7 15 15 O 1.21761 * 120.00361 * 359.71912 * 14 13 9 16 16 N 1.34778 * 120.00098 * 179.45176 * 14 13 9 17 17 C 1.46505 * 120.00012 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46916 * 179.97438 * 17 16 14 19 19 C 1.50701 * 109.46992 * 180.02562 * 18 17 16 20 20 N 1.34777 * 120.00111 * 180.02562 * 19 18 17 21 21 O 1.21279 * 119.99943 * 0.02562 * 19 18 17 22 22 H 0.97003 * 120.00034 * 359.97438 * 1 2 3 23 23 H 1.08004 * 122.78479 * 0.05552 * 10 9 7 24 24 H 1.08003 * 124.31759 * 179.77126 * 11 10 9 25 25 H 0.97003 * 119.99958 * 359.97438 * 16 14 13 26 26 H 1.08994 * 109.47051 * 299.99592 * 17 16 14 27 27 H 1.08998 * 109.47233 * 59.99571 * 17 16 14 28 28 H 1.09001 * 109.47174 * 299.99621 * 18 17 16 29 29 H 1.08998 * 109.47103 * 60.00002 * 18 17 16 30 30 H 0.97004 * 119.99936 * 0.02562 * 20 19 18 31 31 H 0.96993 * 120.00483 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.4878 2.0465 -1.4001 5 1 1.4379 2.6526 0.7001 6 1 3.5380 1.4402 0.6999 7 6 2.0080 -1.2150 -0.0005 8 1 3.0762 -1.2220 0.1584 9 6 1.3206 -2.4232 -0.2080 10 6 0.0552 -2.5167 -0.8928 11 6 -0.4327 -3.7485 -0.9792 12 16 0.6384 -4.9147 -0.2232 13 6 1.7894 -3.6649 0.2230 14 6 3.0431 -3.8903 0.9412 15 8 3.7724 -2.9509 1.2027 16 7 3.3890 -5.1371 1.3184 17 6 4.6448 -5.3628 2.0383 18 6 4.7951 -6.8540 2.3464 19 6 6.0865 -7.0861 3.0875 20 7 6.4323 -8.3329 3.4648 21 8 6.8147 -6.1509 3.3445 22 1 -0.4850 0.8401 0.0004 23 1 -0.4555 -1.6557 -1.2980 24 1 -1.3691 -4.0005 -1.4547 25 1 2.8060 -5.8850 1.1138 26 1 5.4811 -5.0327 1.4223 27 1 4.6354 -4.7986 2.9709 28 1 3.9586 -7.1838 2.9626 29 1 4.8043 -7.4184 1.4140 30 1 5.8500 -9.0809 3.2590 31 1 7.2637 -8.4824 3.9415 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329299834.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:31 Heat of formation + Delta-G solvation = -94.166772 kcal Electronic energy + Delta-G solvation = -17382.065214 eV Core-core repulsion = 14366.938928 eV Total energy + Delta-G solvation = -3015.126286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71906 -39.97260 -37.89210 -35.86356 -34.90810 -34.67112 -31.94341 -30.67078 -28.10782 -25.27884 -23.67079 -21.84717 -21.47935 -20.61000 -19.38273 -18.15930 -17.88573 -17.50306 -17.14027 -16.91361 -16.15417 -15.84049 -15.58646 -15.30162 -14.58689 -14.35148 -14.21459 -13.90838 -13.65204 -13.16851 -12.94927 -12.88145 -12.75581 -12.42075 -12.08889 -12.02645 -11.42301 -11.16782 -11.05670 -10.67011 -10.40080 -9.97783 -9.34307 -8.91731 -8.85735 -6.45017 0.31278 1.33153 1.34299 1.38649 1.47057 1.60870 1.77840 1.98142 2.17837 2.25098 2.54084 2.93652 3.31603 3.67235 4.08737 4.19534 4.38577 4.53784 4.72372 4.85757 4.99594 5.07652 5.28854 5.40504 5.58291 5.69140 5.84768 5.90411 6.40461 6.45508 6.58177 6.72659 6.98622 7.35451 7.74185 8.07275 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.005080 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.801714 B = 5510.070995 C = 6748.011688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.037 3.963 3 Si 0.987 3.013 4 H -0.249 1.249 5 H -0.253 1.253 6 H -0.276 1.276 7 C -0.420 4.420 8 H 0.081 0.919 9 C 0.111 3.889 10 C -0.130 4.130 11 C -0.191 4.191 12 S 0.022 5.978 13 C -0.469 4.469 14 C 0.587 3.413 15 O -0.607 6.607 16 N -0.732 5.732 17 C 0.143 3.857 18 C -0.139 4.139 19 C 0.520 3.480 20 N -0.831 5.831 21 O -0.598 6.598 22 H 0.301 0.699 23 H 0.141 0.859 24 H 0.179 0.821 25 H 0.404 0.596 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.421 0.579 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 -14.343 1.409 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.173 1.173 5 H -0.176 1.176 6 H -0.200 1.200 7 C -0.451 4.451 8 H 0.099 0.901 9 C 0.100 3.900 10 C -0.163 4.163 11 C -0.325 4.325 12 S 0.277 5.723 13 C -0.588 4.588 14 C 0.384 3.616 15 O -0.494 6.494 16 N -0.386 5.386 17 C 0.018 3.982 18 C -0.179 4.179 19 C 0.305 3.695 20 N -0.395 5.395 21 O -0.479 6.479 22 H 0.112 0.888 23 H 0.158 0.842 24 H 0.196 0.804 25 H 0.240 0.760 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.254 0.746 31 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.771 -14.447 1.881 14.676 hybrid contribution 0.240 1.667 -0.047 1.685 sum 2.010 -12.779 1.834 13.066 Atomic orbital electron populations 1.69642 1.08661 1.31906 1.31430 1.27006 0.95810 1.04724 0.90773 0.85122 0.78666 0.75253 0.80270 1.17263 1.17627 1.20047 1.20028 0.96842 0.90948 1.37279 0.90138 1.18404 0.90998 0.92395 0.88206 1.21596 0.96325 0.97328 1.01016 1.25476 1.04213 0.96165 1.06615 1.82116 1.15275 1.11276 1.63588 1.23039 1.06338 0.97541 1.31846 1.17127 0.84523 0.82222 0.77740 1.90642 1.55117 1.43507 1.60096 1.45530 1.23602 1.08368 1.61081 1.20739 0.85619 0.96288 0.95516 1.21747 0.96769 0.95434 1.03979 1.20667 0.87406 0.83235 0.78222 1.43621 1.27356 1.08184 1.60367 1.90788 1.55260 1.44119 1.57751 0.88751 0.84188 0.80408 0.75978 0.94024 0.94236 0.85022 0.84890 0.74646 0.76047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -38.92 10.82 21.89 0.24 -38.68 16 2 C 0.04 1.87 5.39 85.37 0.46 2.33 16 3 Si 0.99 39.58 29.57 68.60 2.03 41.61 16 4 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 5 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.42 -24.25 8.52 23.33 0.20 -24.05 16 8 H 0.08 5.04 6.03 -2.91 -0.02 5.02 16 9 C 0.11 6.17 5.67 -20.89 -0.12 6.05 16 10 C -0.13 -6.33 9.04 22.60 0.20 -6.13 16 11 C -0.19 -7.77 11.07 66.64 0.74 -7.03 16 12 S 0.02 0.87 22.25 -56.49 -1.26 -0.39 16 13 C -0.47 -24.21 6.51 24.66 0.16 -24.05 16 14 C 0.59 30.39 7.76 86.32 0.67 31.06 16 15 O -0.61 -36.77 14.45 -4.54 -0.07 -36.83 16 16 N -0.73 -28.29 5.55 -467.47 -2.59 -30.89 16 17 C 0.14 4.98 4.96 86.38 0.43 5.41 16 18 C -0.14 -2.78 5.81 29.85 0.17 -2.61 16 19 C 0.52 11.72 8.10 87.66 0.71 12.43 16 20 N -0.83 -9.47 8.87 -173.53 -1.54 -11.01 16 21 O -0.60 -20.94 16.82 -3.02 -0.05 -20.99 16 22 H 0.30 12.98 8.29 -92.71 -0.77 12.21 16 23 H 0.14 6.82 6.41 -2.91 -0.02 6.80 16 24 H 0.18 5.70 8.06 -2.91 -0.02 5.67 16 25 H 0.40 12.78 7.55 -92.71 -0.70 12.08 16 26 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 27 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 28 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.42 1.49 8.83 -92.71 -0.82 0.68 16 31 H 0.41 4.11 8.93 -92.71 -0.83 3.29 16 Total: -1.00 -78.68 289.08 -0.75 -79.43 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -1.13 Total: 24.34 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.63 Total: -6.59 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -3.90 Total: -80.58 kcal Atomic # 8 Polarization: -57.71 SS G_CDS: -0.12 Total: -57.82 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -1.26 Total: -0.39 kcal Total: -78.68 -0.75 -79.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329299834.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.739 kcal (2) G-P(sol) polarization free energy of solvation -78.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds