Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00238 * 2 1 4 4 H 1.48494 * 109.47410 * 270.00242 * 3 2 1 5 5 H 1.48501 * 109.47119 * 30.00024 * 3 2 1 6 6 H 1.48501 * 109.46929 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99461 * 173.81800 * 7 2 1 9 9 C 1.50700 * 120.00242 * 353.80904 * 7 2 1 10 10 C 1.52994 * 115.54685 * 84.91308 * 9 7 2 11 11 S 1.81000 * 109.47209 * 39.92355 * 10 9 7 12 12 C 1.76202 * 99.99935 * 179.97438 * 11 10 9 13 13 N 1.31840 * 125.41856 * 0.02778 * 12 11 10 14 14 C 1.33055 * 109.88139 * 179.97438 * 13 12 11 15 15 C 1.37900 * 107.87517 * 359.97438 * 14 13 12 16 16 C 1.41741 * 126.90535 * 179.97438 * 15 14 13 17 17 O 1.21690 * 119.99805 * 0.02562 * 16 15 14 18 18 O 1.34958 * 120.00311 * 179.75022 * 16 15 14 19 19 N 1.35222 * 125.41791 * 180.25887 * 12 11 10 20 20 H 0.97001 * 126.55883 * 0.06321 * 19 12 11 21 21 C 1.52997 * 117.51981 * 230.61606 * 9 7 2 22 22 C 1.52994 * 59.99956 * 107.48088 * 21 9 7 23 23 H 0.97002 * 119.99380 * 355.02041 * 1 2 3 24 24 H 1.09003 * 109.47340 * 279.92422 * 10 9 7 25 25 H 1.09003 * 109.47368 * 159.92227 * 10 9 7 26 26 H 1.07999 * 126.06250 * 179.97438 * 14 13 12 27 27 H 0.96702 * 113.99939 * 179.97438 * 18 16 15 28 28 H 1.09004 * 117.49778 * 214.97467 * 21 9 7 29 29 H 1.09005 * 117.49579 * 359.97438 * 21 9 7 30 30 H 1.09004 * 117.49810 * 252.50717 * 22 21 9 31 31 H 1.08997 * 117.51520 * 107.48263 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0798 -1.1968 -0.1013 9 6 1.2575 -2.4955 0.1396 10 6 0.6964 -3.0774 -1.1593 11 16 1.8975 -2.8444 -2.4932 12 6 1.0187 -3.5847 -3.8290 13 7 -0.1811 -4.1252 -3.7480 14 6 -0.5491 -4.5905 -4.9390 15 6 0.4723 -4.3317 -5.8286 16 6 0.5028 -4.6575 -7.2077 17 8 -0.4435 -5.2261 -7.7196 18 8 1.5789 -4.3321 -7.9543 19 7 1.4693 -3.6927 -5.0993 20 1 2.3237 -3.3822 -5.4377 21 6 1.7485 -3.4816 1.2014 22 6 0.4455 -2.7097 1.4185 23 1 -0.4849 0.8369 0.0729 24 1 -0.2329 -2.5678 -1.4141 25 1 0.5026 -4.1418 -1.0268 26 1 -1.4823 -5.0834 -5.1683 27 1 1.5079 -4.5951 -8.8822 28 1 1.6718 -4.5450 0.9745 29 1 2.6123 -3.1894 1.7986 30 1 0.4519 -1.9096 2.1587 31 1 -0.4887 -3.2649 1.3344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601062899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -17.565477 kcal Electronic energy + Delta-G solvation = -17391.718359 eV Core-core repulsion = 14379.913754 eV Total energy + Delta-G solvation = -3011.804605 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.89283 -39.84982 -36.69509 -36.20406 -32.67271 -32.07253 -30.18673 -27.81388 -25.54310 -24.49702 -21.96869 -21.20133 -20.77765 -19.53278 -18.85279 -17.97156 -16.67864 -16.05803 -15.87974 -15.05952 -14.75416 -14.62643 -14.01326 -13.85615 -13.64561 -13.46436 -12.95116 -12.21557 -11.75508 -11.63448 -11.09236 -10.99395 -10.94880 -10.57940 -10.31562 -10.18566 -10.17233 -10.09178 -9.70962 -9.25372 -8.91366 -8.55943 -8.17013 -6.95802 -6.16830 -4.24789 0.94355 1.65695 2.66937 2.88854 3.09407 3.20991 3.23827 3.31593 3.33953 3.40124 4.31769 4.82196 5.13323 5.15289 5.20952 5.50867 5.72584 5.92527 6.11087 6.20184 6.37201 6.43024 6.47784 6.66343 6.77428 7.00006 7.08128 7.23092 7.39080 7.68083 7.74494 7.83586 8.22394 8.76826 9.42518 10.91191 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004879 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.370981 B = 5737.914650 C = 6274.738960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.081 3.919 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.499 4.499 8 H 0.065 0.935 9 C 0.045 3.955 10 C -0.042 4.042 11 S 0.036 5.964 12 C 0.240 3.760 13 N -0.502 5.502 14 C 0.119 3.881 15 C -0.123 4.123 16 C 0.563 3.437 17 O -0.518 6.518 18 O -0.516 6.516 19 N -0.534 5.534 20 H 0.430 0.570 21 C -0.207 4.207 22 C -0.145 4.145 23 H 0.263 0.737 24 H 0.096 0.904 25 H 0.066 0.934 26 H 0.187 0.813 27 H 0.411 0.589 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.055 -6.635 -9.340 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.125 4.125 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.538 4.538 8 H 0.083 0.917 9 C 0.043 3.957 10 C -0.191 4.191 11 S 0.272 5.728 12 C -0.130 4.130 13 N -0.225 5.225 14 C -0.041 4.041 15 C -0.238 4.238 16 C 0.409 3.591 17 O -0.409 6.409 18 O -0.326 6.326 19 N -0.143 5.143 20 H 0.270 0.730 21 C -0.244 4.244 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.204 0.796 27 H 0.268 0.732 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.310 -6.075 -8.427 10.903 hybrid contribution -0.106 0.417 -1.547 1.606 sum 3.204 -5.657 -9.974 11.906 Atomic orbital electron populations 1.70008 1.05958 1.27222 1.47027 1.24946 0.94733 0.98964 0.93850 0.86671 0.80092 0.83394 0.78399 1.20356 1.21095 1.19705 1.20355 0.92924 0.88532 1.52008 0.91737 1.18545 0.98675 0.94137 0.84364 1.23300 0.99089 1.01887 0.94833 1.86263 1.22600 1.67212 0.96749 1.26923 0.95285 1.00376 0.90414 1.70836 1.10239 1.17268 1.24143 1.23119 0.97549 0.96246 0.87224 1.19247 0.95513 1.17556 0.91534 1.17948 0.80033 0.75651 0.85445 1.90972 1.36233 1.40890 1.72765 1.85041 1.43317 1.77046 1.27237 1.43234 1.17262 1.45843 1.07945 0.73041 1.23107 0.98677 0.95677 1.06917 1.22557 0.92453 1.01174 1.02265 0.92710 0.88525 0.91493 0.79556 0.73222 0.91355 0.90096 0.89691 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.10 12.93 55.43 0.72 -22.38 16 2 C 0.08 2.06 5.39 -17.81 -0.10 1.96 16 3 Si 0.89 19.97 29.55 -169.99 -5.02 14.95 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.50 -12.40 7.54 -34.44 -0.26 -12.66 16 8 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 9 C 0.05 1.02 1.64 -155.67 -0.26 0.77 16 10 C -0.04 -0.89 5.28 37.15 0.20 -0.70 16 11 S 0.04 0.69 21.16 -107.50 -2.27 -1.59 16 12 C 0.24 4.20 8.21 -89.08 -0.73 3.47 16 13 N -0.50 -9.17 10.50 -12.99 -0.14 -9.30 16 14 C 0.12 1.87 11.62 -17.15 -0.20 1.68 16 15 C -0.12 -1.81 6.96 -83.36 -0.58 -2.39 16 16 C 0.56 7.40 8.09 32.07 0.26 7.66 16 17 O -0.52 -7.85 17.56 -19.41 -0.34 -8.19 16 18 O -0.52 -5.02 13.54 -41.20 -0.56 -5.58 16 19 N -0.53 -7.79 6.26 -10.46 -0.07 -7.85 16 20 H 0.43 5.09 8.96 -40.82 -0.37 4.72 16 21 C -0.21 -4.17 9.88 -26.74 -0.26 -4.43 16 22 C -0.14 -3.16 9.47 -26.74 -0.25 -3.41 16 23 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 24 H 0.10 2.28 8.14 -51.91 -0.42 1.86 16 25 H 0.07 1.33 7.95 -51.91 -0.41 0.92 16 26 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 27 H 0.41 2.07 8.98 45.56 0.41 2.48 16 28 H 0.07 1.24 8.08 -51.93 -0.42 0.83 16 29 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -29.10 297.64 -7.83 -36.93 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -2.45 Total: 6.60 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.18 Total: -8.06 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.51 Total: -39.54 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.90 Total: -13.77 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.27 Total: -1.59 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.10 -7.83 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.360 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds