Wall clock time and date at job start Mon Mar 30 2020 01:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00238 * 2 1 4 4 H 1.48494 * 109.47410 * 270.00242 * 3 2 1 5 5 H 1.48501 * 109.47119 * 30.00024 * 3 2 1 6 6 H 1.48501 * 109.46929 * 149.99884 * 3 2 1 7 7 C 1.37882 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99461 * 173.81800 * 7 2 1 9 9 C 1.50700 * 120.00242 * 353.80904 * 7 2 1 10 10 C 1.52994 * 115.54685 * 84.91308 * 9 7 2 11 11 S 1.81000 * 109.47209 * 39.92355 * 10 9 7 12 12 C 1.76202 * 99.99935 * 179.97438 * 11 10 9 13 13 N 1.31840 * 125.41856 * 0.02778 * 12 11 10 14 14 C 1.33055 * 109.88139 * 179.97438 * 13 12 11 15 15 C 1.37900 * 107.87517 * 359.97438 * 14 13 12 16 16 C 1.41741 * 126.90535 * 179.97438 * 15 14 13 17 17 O 1.21690 * 119.99805 * 0.02562 * 16 15 14 18 18 O 1.34958 * 120.00311 * 179.75022 * 16 15 14 19 19 N 1.35222 * 125.41791 * 180.25887 * 12 11 10 20 20 H 0.97001 * 126.55883 * 0.06321 * 19 12 11 21 21 C 1.52997 * 117.51981 * 230.61606 * 9 7 2 22 22 C 1.52994 * 59.99956 * 107.48088 * 21 9 7 23 23 H 0.97002 * 119.99380 * 355.02041 * 1 2 3 24 24 H 1.09003 * 109.47340 * 279.92422 * 10 9 7 25 25 H 1.09003 * 109.47368 * 159.92227 * 10 9 7 26 26 H 1.07999 * 126.06250 * 179.97438 * 14 13 12 27 27 H 0.96702 * 113.99939 * 179.97438 * 18 16 15 28 28 H 1.09004 * 117.49778 * 214.97467 * 21 9 7 29 29 H 1.09005 * 117.49579 * 359.97438 * 21 9 7 30 30 H 1.09004 * 117.49810 * 252.50717 * 22 21 9 31 31 H 1.08997 * 117.51520 * 107.48263 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0798 -1.1968 -0.1013 9 6 1.2575 -2.4955 0.1396 10 6 0.6964 -3.0774 -1.1593 11 16 1.8975 -2.8444 -2.4932 12 6 1.0187 -3.5847 -3.8290 13 7 -0.1811 -4.1252 -3.7480 14 6 -0.5491 -4.5905 -4.9390 15 6 0.4723 -4.3317 -5.8286 16 6 0.5028 -4.6575 -7.2077 17 8 -0.4435 -5.2261 -7.7196 18 8 1.5789 -4.3321 -7.9543 19 7 1.4693 -3.6927 -5.0993 20 1 2.3237 -3.3822 -5.4377 21 6 1.7485 -3.4816 1.2014 22 6 0.4455 -2.7097 1.4185 23 1 -0.4849 0.8369 0.0729 24 1 -0.2329 -2.5678 -1.4141 25 1 0.5026 -4.1418 -1.0268 26 1 -1.4823 -5.0834 -5.1683 27 1 1.5079 -4.5951 -8.8822 28 1 1.6718 -4.5450 0.9745 29 1 2.6123 -3.1894 1.7986 30 1 0.4519 -1.9096 2.1587 31 1 -0.4887 -3.2649 1.3344 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:53 Heat of formation + Delta-G solvation = -35.790407 kcal Electronic energy + Delta-G solvation = -17392.508651 eV Core-core repulsion = 14379.913754 eV Total energy + Delta-G solvation = -3012.594897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.13037 -40.89278 -38.42487 -37.17117 -34.00057 -33.93103 -31.41316 -29.47925 -27.41550 -25.70191 -23.23428 -22.88590 -21.97041 -21.19952 -20.09765 -19.02708 -18.19857 -17.39959 -17.15819 -16.58306 -16.38528 -15.88153 -15.61318 -15.27662 -14.92405 -14.77714 -14.49796 -13.92965 -13.36247 -12.94760 -12.80535 -12.69892 -12.34257 -12.07924 -11.98321 -11.74146 -11.47580 -11.44306 -11.40179 -10.73509 -10.54271 -10.43085 -9.89582 -8.40046 -8.09213 -6.21184 -0.23308 0.24648 1.40252 1.43475 1.45812 1.48272 1.55598 1.93983 2.03319 2.33360 2.46034 3.21407 3.48482 3.63647 4.00360 4.23416 4.37476 4.42657 4.59348 4.70145 4.72145 5.02294 5.04969 5.25191 5.28826 5.39917 5.52107 5.66642 5.78863 5.94956 6.35846 6.53978 6.82138 6.84389 7.48377 8.98241 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026080 B = 0.004879 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.370981 B = 5737.914650 C = 6274.738960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.059 0.941 9 C 0.018 3.982 10 C -0.031 4.031 11 S 0.037 5.963 12 C 0.223 3.777 13 N -0.527 5.527 14 C 0.102 3.898 15 C -0.111 4.111 16 C 0.574 3.426 17 O -0.536 6.536 18 O -0.503 6.503 19 N -0.517 5.517 20 H 0.442 0.558 21 C -0.180 4.180 22 C -0.152 4.152 23 H 0.260 0.740 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.207 0.793 27 H 0.434 0.566 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.120 -7.379 -10.819 13.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.016 3.984 10 C -0.181 4.181 11 S 0.271 5.729 12 C -0.148 4.148 13 N -0.250 5.250 14 C -0.058 4.058 15 C -0.227 4.227 16 C 0.420 3.580 17 O -0.428 6.428 18 O -0.316 6.316 19 N -0.126 5.126 20 H 0.285 0.715 21 C -0.217 4.217 22 C -0.191 4.191 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.223 0.777 27 H 0.296 0.704 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.417 -6.814 -9.929 12.827 hybrid contribution -0.414 0.557 -1.269 1.446 sum 4.003 -6.257 -11.198 13.438 Atomic orbital electron populations 1.70112 1.07067 1.27472 1.48834 1.25534 0.95271 1.01516 0.93969 0.85869 0.79151 0.80344 0.78216 1.20273 1.21328 1.19133 1.20541 0.92752 0.89642 1.51143 0.92287 1.18662 0.99712 0.94570 0.85454 1.22999 0.98237 1.01732 0.95108 1.85984 1.21728 1.68514 0.96665 1.26448 0.95568 1.01906 0.90899 1.70762 1.10724 1.17748 1.25755 1.23501 0.98787 0.96788 0.86693 1.19512 0.94847 1.16041 0.92338 1.17640 0.80322 0.75053 0.84941 1.90981 1.37174 1.41609 1.73004 1.84991 1.41394 1.76273 1.28938 1.43164 1.17693 1.44786 1.06938 0.71483 1.23116 0.97518 0.96475 1.04638 1.22473 0.93773 1.01328 1.01571 0.93094 0.91752 0.90537 0.77658 0.70440 0.88870 0.89791 0.91711 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.81 12.93 21.45 0.28 -48.54 16 2 C 0.04 2.02 5.39 84.65 0.46 2.47 16 3 Si 0.94 41.11 29.55 68.60 2.03 43.14 16 4 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.50 -25.01 7.54 25.60 0.19 -24.81 16 8 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 9 C 0.02 0.82 1.64 -52.93 -0.09 0.73 16 10 C -0.03 -1.33 5.28 71.98 0.38 -0.95 16 11 S 0.04 1.37 21.16 -56.49 -1.20 0.18 16 12 C 0.22 7.59 8.21 179.81 1.48 9.07 16 13 N -0.53 -18.90 10.50 -195.03 -2.05 -20.94 16 14 C 0.10 3.06 11.62 84.43 0.98 4.04 16 15 C -0.11 -3.03 6.96 38.78 0.27 -2.76 16 16 C 0.57 13.46 8.09 68.69 0.56 14.01 16 17 O -0.54 -14.87 17.56 19.21 0.34 -14.53 16 18 O -0.50 -7.96 13.54 -58.75 -0.80 -8.75 16 19 N -0.52 -14.06 6.26 -187.00 -1.17 -15.23 16 20 H 0.44 9.43 8.96 -92.71 -0.83 8.60 16 21 C -0.18 -7.04 9.88 30.59 0.30 -6.74 16 22 C -0.15 -6.64 9.47 30.59 0.29 -6.35 16 23 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 24 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.08 3.02 7.95 -2.39 -0.02 3.00 16 26 H 0.21 5.12 8.06 -2.91 -0.02 5.09 16 27 H 0.43 2.66 8.98 -74.06 -0.67 1.99 16 28 H 0.09 3.17 8.08 -2.39 -0.02 3.15 16 29 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 30 H 0.06 3.06 8.14 -2.38 -0.02 3.04 16 31 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -61.67 297.64 1.94 -59.73 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -0.31 Total: 16.24 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.82 Total: -11.30 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -2.94 Total: -84.71 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.46 Total: -23.28 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.20 Total: 0.18 kcal Total: -61.67 1.94 -59.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.941 kcal (2) G-P(sol) polarization free energy of solvation -61.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds