Wall clock time and date at job start Mon Mar 30 2020 01:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48501 * 109.46913 * 239.99982 * 3 2 1 5 5 H 1.48497 * 109.47321 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47092 * 120.00250 * 3 2 1 7 7 C 1.37884 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99937 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47109 * 180.02562 * 10 9 7 12 12 O 1.45205 * 109.47237 * 180.02562 * 11 10 9 13 13 C 1.34843 * 117.00146 * 179.97438 * 12 11 10 14 14 O 1.21551 * 120.00139 * 0.02562 * 13 12 11 15 15 C 1.46995 * 120.00228 * 179.97438 * 13 12 11 16 16 O 1.34483 * 126.15093 * 359.97438 * 15 13 12 17 17 C 1.33858 * 109.83922 * 180.02562 * 16 15 13 18 18 C 1.34858 * 109.34420 * 359.75824 * 17 16 15 19 19 C 1.38896 * 126.15538 * 179.97438 * 15 13 12 20 20 C 1.47793 * 126.93448 * 359.94713 * 19 15 13 21 21 O 1.21454 * 120.00368 * 359.97438 * 20 19 15 22 22 O 1.34711 * 120.00151 * 179.97438 * 20 19 15 23 23 H 0.96997 * 120.00137 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46400 * 60.00449 * 9 7 2 25 25 H 1.09000 * 109.47223 * 300.00360 * 9 7 2 26 26 H 1.09003 * 109.46675 * 60.00329 * 10 9 7 27 27 H 1.08999 * 109.46988 * 300.00486 * 10 9 7 28 28 H 1.09003 * 109.47220 * 60.00495 * 11 10 9 29 29 H 1.08999 * 109.47455 * 300.00032 * 11 10 9 30 30 H 1.07997 * 125.33011 * 179.97438 * 17 16 15 31 31 H 1.07996 * 126.50544 * 180.26285 * 18 17 16 32 32 H 0.96700 * 117.00324 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6622 -0.0018 11 6 1.4803 -4.9871 -0.0025 12 8 2.4239 -6.0908 -0.0031 13 6 1.9085 -7.3368 -0.0032 14 8 0.7035 -7.4961 -0.0032 15 6 2.8039 -8.5026 -0.0043 16 8 4.1483 -8.4703 -0.0059 17 6 4.6327 -9.7182 -0.0072 18 6 3.6082 -10.5951 -0.0011 19 6 2.4137 -9.8356 -0.0040 20 6 1.0304 -10.3560 -0.0014 21 8 0.0916 -9.5854 0.0013 22 8 0.8107 -11.6851 -0.0020 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6247 -2.5572 0.8896 26 1 2.8726 -3.6048 0.8878 27 1 2.8713 -3.6039 -0.8922 28 1 0.8533 -5.0442 -0.8923 29 1 0.8540 -5.0455 0.8877 30 1 5.6801 -9.9815 -0.0089 31 1 3.6846 -11.6723 0.0035 32 1 -0.1109 -11.9778 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622006.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:12 Heat of formation + Delta-G solvation = -186.447268 kcal Electronic energy + Delta-G solvation = -19375.111096 eV Core-core repulsion = 15880.937604 eV Total energy + Delta-G solvation = -3494.173491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.087 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.04405 -41.40693 -40.93001 -37.99251 -37.03263 -35.96698 -34.53474 -33.73264 -31.53494 -29.08112 -26.79510 -25.32750 -23.99191 -22.83113 -22.20329 -21.03903 -19.81241 -19.00000 -18.70680 -18.20360 -18.17660 -17.35294 -17.23732 -16.49997 -16.47030 -16.18406 -15.58993 -15.01280 -14.66929 -14.18733 -14.04273 -13.88995 -13.86444 -13.71616 -12.81398 -12.61709 -12.57554 -12.51203 -12.28741 -12.12714 -11.61646 -11.47541 -11.41231 -11.35914 -11.26758 -10.57063 -10.02239 -8.21838 -6.33796 -0.79306 0.82121 0.96443 1.29376 1.41565 1.45131 1.53057 1.71031 1.97166 2.01352 2.41592 3.11908 3.44621 3.47121 3.90058 3.95529 3.99413 4.11775 4.35929 4.53295 4.73587 4.76597 4.78338 5.03361 5.13326 5.20998 5.47006 5.52801 5.56723 5.62122 5.79166 6.17971 6.44348 6.81716 6.93590 7.35685 8.90302 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.039432 B = 0.003230 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.911849 B = 8667.376080 C = 9351.537471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.026 3.974 10 C -0.093 4.093 11 C 0.078 3.922 12 O -0.349 6.349 13 C 0.521 3.479 14 O -0.468 6.468 15 C -0.015 4.015 16 O -0.140 6.140 17 C 0.029 3.971 18 C -0.179 4.179 19 C -0.134 4.134 20 C 0.533 3.467 21 O -0.506 6.506 22 O -0.495 6.495 23 H 0.265 0.735 24 H -0.002 1.002 25 H -0.002 1.002 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.277 0.723 31 H 0.207 0.793 32 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.966 -26.361 -0.011 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.005 3.995 12 O -0.266 6.266 13 C 0.363 3.637 14 O -0.356 6.356 15 C -0.068 4.068 16 O -0.033 6.033 17 C -0.039 4.039 18 C -0.197 4.197 19 C -0.137 4.137 20 C 0.375 3.625 21 O -0.394 6.394 22 O -0.310 6.310 23 H 0.074 0.926 24 H 0.016 0.984 25 H 0.016 0.984 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.293 0.707 31 H 0.224 0.776 32 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 10.731 -25.642 -0.010 27.797 hybrid contribution -1.080 0.773 0.002 1.328 sum 9.651 -24.868 -0.009 26.675 Atomic orbital electron populations 1.70097 1.07931 1.28043 1.51335 1.26032 0.95797 1.03587 0.94527 0.85420 0.78177 0.77641 0.79328 1.18989 1.20924 1.18977 1.21599 0.93796 0.91813 1.51093 0.91564 1.18936 0.94240 0.92371 0.95573 1.21474 0.98804 0.90015 1.02760 1.23288 0.90843 0.83034 1.02322 1.86604 1.41816 1.14576 1.83617 1.19735 0.86272 0.82764 0.74883 1.91134 1.14450 1.85805 1.44173 1.20939 0.81809 0.91697 1.12405 1.84125 1.17770 1.33421 1.67956 1.25702 1.02599 0.77723 0.97904 1.22339 0.87851 1.03420 1.06078 1.19897 0.93873 0.91245 1.08705 1.19971 0.88241 0.81140 0.73138 1.91150 1.45091 1.58597 1.44611 1.84451 1.38998 1.22148 1.85394 0.92649 0.98398 0.98394 0.91287 0.91291 0.91441 0.91454 0.70723 0.77632 0.70186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.60 13.29 21.45 0.28 -57.31 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.55 -31.28 9.11 25.60 0.23 -31.04 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.40 4.97 29.85 0.15 1.55 16 10 C -0.09 -3.99 5.53 30.59 0.17 -3.82 16 11 C 0.08 3.09 5.48 71.98 0.39 3.48 16 12 O -0.35 -12.75 10.23 -56.33 -0.58 -13.33 16 13 C 0.52 18.42 7.95 70.12 0.56 18.98 16 14 O -0.47 -19.37 13.01 27.59 0.36 -19.01 16 15 C -0.02 -0.41 7.29 24.72 0.18 -0.23 16 16 O -0.14 -2.83 10.62 0.09 0.00 -2.83 16 17 C 0.03 0.26 12.02 67.04 0.81 1.07 16 18 C -0.18 -2.03 10.74 22.31 0.24 -1.79 16 19 C -0.13 -2.98 6.22 -19.78 -0.12 -3.11 16 20 C 0.53 13.05 8.35 70.35 0.59 13.63 16 21 O -0.51 -17.43 14.02 27.89 0.39 -17.04 16 22 O -0.50 -7.18 13.30 -56.21 -0.75 -7.93 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 26 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.28 -0.90 8.06 -2.91 -0.02 -0.92 16 31 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.44 2.63 9.11 -74.06 -0.67 1.95 16 Total: -1.00 -80.92 298.56 5.88 -75.04 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: 0.49 Total: -3.10 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 3.65 Total: -0.91 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.28 Total: -57.31 kcal Atomic # 8 Polarization: -59.56 SS G_CDS: -0.57 Total: -60.13 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -80.92 5.88 -75.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622006.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.411 kcal (2) G-P(sol) polarization free energy of solvation -80.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds