Wall clock time and date at job start Mon Mar 30 2020 02:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00244 * 2 1 4 4 H 1.48501 * 109.47429 * 270.00060 * 3 2 1 5 5 H 1.48507 * 109.47244 * 29.99946 * 3 2 1 6 6 H 1.48505 * 109.47112 * 149.99540 * 3 2 1 7 7 C 1.37883 * 119.99576 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99442 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00028 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46976 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00273 * 180.02562 * 11 10 9 13 13 O 1.21608 * 120.00177 * 359.97438 * 12 11 10 14 14 C 1.47433 * 120.00153 * 179.97438 * 12 11 10 15 15 C 1.39756 * 120.20094 * 6.01910 * 14 12 11 16 16 C 1.37735 * 119.94597 * 180.29907 * 15 14 12 17 17 C 1.38614 * 120.36414 * 359.97437 * 16 15 14 18 18 C 1.38035 * 120.40880 * 0.02562 * 17 16 15 19 19 Cl 1.73605 * 119.98136 * 179.97438 * 18 17 16 20 20 C 1.39065 * 120.04371 * 0.02562 * 18 17 16 21 21 N 1.38941 * 120.18016 * 179.97438 * 20 18 17 22 22 H 0.96997 * 120.00106 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46915 * 60.00649 * 9 7 2 24 24 H 1.08994 * 109.47637 * 300.00377 * 9 7 2 25 25 H 1.08997 * 109.47213 * 59.99707 * 10 9 7 26 26 H 1.09002 * 109.46906 * 300.00131 * 10 9 7 27 27 H 0.96997 * 119.99585 * 359.97438 * 11 10 9 28 28 H 1.07995 * 120.02654 * 0.25345 * 15 14 12 29 29 H 1.08002 * 119.81747 * 179.97438 * 16 15 14 30 30 H 1.07997 * 119.80174 * 180.02562 * 17 16 15 31 31 H 0.97000 * 119.99838 * 204.24896 * 21 20 18 32 32 H 0.97001 * 119.99960 * 24.24940 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4400 0.7002 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1864 -6.0980 -0.0007 13 8 3.4025 -6.0981 -0.0003 14 6 1.4492 -7.3748 -0.0008 15 6 0.0575 -7.3830 -0.1279 16 6 -0.6265 -8.5785 -0.1211 17 6 0.0579 -9.7766 0.0108 18 6 1.4324 -9.7858 0.1373 19 17 2.2784 -11.2928 0.3025 20 6 2.1400 -8.5886 0.1336 21 7 3.5235 -8.5945 0.2614 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6245 -2.5571 0.8896 25 1 2.8718 -3.6044 0.8894 26 1 2.8718 -3.6043 -0.8905 27 1 0.5426 -4.9307 -0.0011 28 1 -0.4813 -6.4527 -0.2307 29 1 -1.7021 -8.5824 -0.2191 30 1 -0.4875 -10.7088 0.0145 31 1 3.9821 -7.8122 0.6057 32 1 4.0307 -9.3810 0.0062 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001625048406.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:24 Heat of formation + Delta-G solvation = -49.320153 kcal Electronic energy + Delta-G solvation = -17257.998008 eV Core-core repulsion = 14242.772710 eV Total energy + Delta-G solvation = -3015.225297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.40895 -39.47375 -37.34889 -36.78844 -35.50389 -34.72689 -32.57279 -30.97192 -29.67323 -26.89987 -24.83118 -23.40355 -22.60618 -21.69762 -19.07237 -18.51306 -17.94316 -17.78817 -16.86232 -16.53706 -16.41434 -16.13690 -15.41889 -15.22722 -14.90215 -14.60523 -14.33041 -14.27307 -13.23736 -13.17773 -12.94856 -12.68112 -12.51795 -12.50779 -12.23179 -11.97076 -11.68281 -11.59556 -11.43812 -10.81526 -10.60161 -10.14965 -9.80322 -8.65531 -8.23797 -6.34017 -0.18660 0.40716 1.14348 1.42531 1.42648 1.54082 1.81556 2.24045 2.45588 2.79256 2.90638 3.11139 3.66577 3.94996 4.06493 4.34231 4.45620 4.49496 4.51260 4.70987 4.85511 4.98207 5.22170 5.25774 5.41242 5.48140 5.58557 5.72803 5.78718 6.16157 6.40498 6.57251 6.79027 6.82388 7.24321 7.35232 8.88039 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.047081 B = 0.003389 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.576600 B = 8261.209380 C = 8828.453943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.142 3.858 11 N -0.711 5.711 12 C 0.558 3.442 13 O -0.585 6.585 14 C -0.227 4.227 15 C -0.036 4.036 16 C -0.166 4.166 17 C -0.032 4.032 18 C -0.134 4.134 19 Cl -0.064 7.064 20 C 0.267 3.733 21 N -0.854 5.854 22 H 0.266 0.734 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.409 0.591 28 H 0.146 0.854 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.411 0.589 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -21.531 0.180 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.018 3.982 11 N -0.361 5.361 12 C 0.348 3.652 13 O -0.468 6.468 14 C -0.235 4.235 15 C -0.055 4.055 16 C -0.186 4.186 17 C -0.051 4.051 18 C -0.166 4.166 19 Cl -0.036 7.036 20 C 0.155 3.845 21 N -0.398 5.398 22 H 0.075 0.925 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.246 0.754 28 H 0.164 0.836 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.247 0.753 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -1.034 -21.474 0.210 21.500 hybrid contribution 0.502 0.964 0.018 1.087 sum -0.531 -20.510 0.228 20.519 Atomic orbital electron populations 1.70049 1.07486 1.28004 1.50949 1.25853 0.95797 1.03027 0.94424 0.85460 0.78640 0.78539 0.78497 1.19805 1.20528 1.19101 1.21463 0.93590 0.91936 1.51584 0.92322 1.19137 0.94241 0.91673 0.96462 1.21252 0.95058 0.81900 0.99967 1.45987 1.11055 1.05377 1.73691 1.18452 0.86881 0.84275 0.75576 1.90514 1.14996 1.87710 1.53547 1.19409 0.95207 0.90759 1.18162 1.21524 0.91213 1.00535 0.92207 1.21174 1.01861 0.90185 1.05346 1.21414 0.90665 1.00644 0.92366 1.20572 0.93539 0.85409 1.17058 1.98338 1.78152 1.30363 1.96699 1.17551 0.85428 0.91217 0.90352 1.42945 1.03408 1.21970 1.71514 0.92523 0.97190 0.97197 0.93312 0.93414 0.75390 0.83642 0.81483 0.81895 0.75261 0.76702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.42 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -30.34 9.11 25.60 0.23 -30.10 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 6.04 5.61 86.38 0.48 6.52 16 11 N -0.71 -24.72 5.50 -466.37 -2.57 -27.29 16 12 C 0.56 19.20 7.74 86.67 0.67 19.87 16 13 O -0.58 -23.15 13.82 -4.06 -0.06 -23.21 16 14 C -0.23 -6.20 5.89 -19.99 -0.12 -6.31 16 15 C -0.04 -0.73 9.52 22.52 0.21 -0.52 16 16 C -0.17 -2.56 10.02 22.24 0.22 -2.33 16 17 C -0.03 -0.50 9.81 22.31 0.22 -0.28 16 18 C -0.13 -2.78 6.33 22.42 0.14 -2.64 16 19 Cl -0.06 -1.17 27.77 -2.72 -0.08 -1.25 16 20 C 0.27 6.83 6.76 38.72 0.26 7.09 16 21 N -0.85 -21.65 8.33 -50.86 -0.42 -22.08 16 22 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 23 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.49 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.41 12.12 6.54 -92.71 -0.61 11.51 16 28 H 0.15 2.56 6.45 -2.91 -0.02 2.54 16 29 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.41 11.93 6.10 -92.71 -0.57 11.36 16 32 H 0.40 8.50 7.86 -92.71 -0.73 7.77 16 Total: -1.00 -65.16 292.58 1.42 -63.74 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.72 Total: 24.73 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 2.94 Total: -6.54 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -2.71 Total: -102.79 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -0.08 Total: -1.25 kcal Total: -65.16 1.42 -63.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001625048406.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.420 kcal (2) G-P(sol) polarization free energy of solvation -65.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds