Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 N 1.49360 * 108.32820 * 2 1 4 4 O 1.42108 * 114.65061 * 238.90037 * 2 1 3 5 5 C 1.76197 * 108.33742 * 117.79178 * 2 1 3 6 6 C 1.38330 * 119.91391 * 29.71893 * 5 2 1 7 7 C 1.38061 * 120.07995 * 179.76572 * 6 5 2 8 8 C 1.39026 * 119.91913 * 0.49581 * 7 6 5 9 9 N 1.39535 * 120.08509 * 179.74097 * 8 7 6 10 10 C 1.34770 * 119.99975 * 213.41446 * 9 8 7 11 11 O 1.21741 * 119.99991 * 5.27308 * 10 9 8 12 12 C 1.46167 * 120.00088 * 185.28014 * 10 9 8 13 13 H 1.08006 * 119.99823 * 359.97438 * 12 10 9 14 14 C 1.40122 * 120.00154 * 179.97438 * 12 10 9 15 15 N 1.30630 * 120.00136 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99908 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46739 * 60.00083 * 16 14 12 18 18 H 1.48497 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47452 * 300.00241 * 16 14 12 20 20 C 1.39030 * 119.82942 * 359.76355 * 8 7 6 21 21 C 1.38060 * 119.91681 * 0.02562 * 20 8 7 22 22 H 1.09006 * 109.46886 * 181.10176 * 1 2 3 23 23 H 1.08992 * 109.47390 * 301.09842 * 1 2 3 24 24 H 1.08998 * 109.47464 * 61.10602 * 1 2 3 25 25 H 0.97000 * 119.99932 * 297.52913 * 3 2 1 26 26 H 1.08000 * 119.96113 * 0.02562 * 6 5 2 27 27 H 1.08006 * 120.03636 * 180.25207 * 7 6 5 28 28 H 0.96993 * 119.99779 * 33.41344 * 9 8 7 29 29 H 0.96997 * 120.00381 * 180.02562 * 15 14 12 30 30 H 1.07997 * 120.03598 * 179.97438 * 20 8 7 31 31 H 1.08004 * 119.95345 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2836 1.4178 0.0000 4 8 2.4067 -0.6671 -1.1059 5 6 2.3683 -0.7798 1.4796 6 6 1.5969 -1.7637 2.0715 7 6 2.0303 -2.3804 3.2282 8 6 3.2386 -2.0042 3.8038 9 7 3.6773 -2.6214 4.9758 10 6 4.3855 -1.9196 5.8825 11 8 4.5604 -0.7250 5.7260 12 6 4.9436 -2.5927 7.0539 13 1 4.7881 -3.6524 7.1929 14 6 5.6803 -1.8631 7.9964 15 7 5.8688 -0.5814 7.8280 16 14 6.3930 -2.7232 9.4937 17 1 7.3289 -3.7888 9.0535 18 1 7.1229 -1.7371 10.3303 19 1 5.2931 -3.3274 10.2877 20 6 4.0085 -1.0112 3.2088 21 6 3.5706 -0.4021 2.0497 22 1 -0.3633 -1.0275 0.0198 23 1 -0.3634 0.5308 0.8799 24 1 -0.3634 0.4965 -0.8997 25 1 2.0676 2.0003 -0.7449 26 1 0.6565 -2.0528 1.6260 27 1 1.4293 -3.1514 3.6876 28 1 3.4726 -3.5556 5.1378 29 1 6.3791 -0.0764 8.4802 30 1 4.9475 -0.7160 3.6532 31 1 4.1680 0.3697 1.5873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626275309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -2.481720 kcal Electronic energy + Delta-G solvation = -17574.616797 eV Core-core repulsion = 14563.466273 eV Total energy + Delta-G solvation = -3011.150524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.50336 -37.21734 -36.00565 -33.79525 -32.65240 -31.92163 -30.87626 -29.61593 -29.07669 -26.50119 -22.94764 -22.51648 -20.15460 -18.76894 -17.83615 -17.00019 -16.36885 -16.10940 -15.67741 -15.29840 -14.65571 -14.21645 -14.12968 -13.45512 -13.33863 -13.23692 -13.01804 -12.87845 -12.53828 -12.22567 -11.55127 -11.44990 -11.20518 -11.07707 -10.80729 -10.68247 -10.48430 -9.80721 -9.41078 -9.07357 -8.96394 -8.78254 -7.98984 -7.57660 -6.50054 -4.99441 -0.01924 1.18973 1.66196 2.96575 3.00365 3.06256 3.08307 3.74558 3.85796 3.97339 4.29396 4.31841 4.42150 4.76486 4.87730 5.00144 5.08173 5.43757 5.58523 5.60469 5.71417 5.92147 6.17633 6.20264 6.53124 6.75310 7.04184 7.14621 7.46583 7.48411 7.74063 7.94033 8.68756 8.94713 10.16550 10.39363 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.052183 B = 0.003983 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.447263 B = 7028.258887 C = 7297.563368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.677 4.677 2 S 2.409 3.591 3 N -1.286 6.286 4 O -0.973 6.973 5 C -0.605 4.605 6 C -0.025 4.025 7 C -0.190 4.190 8 C 0.251 3.749 9 N -0.694 5.694 10 C 0.536 3.464 11 O -0.553 6.553 12 C -0.535 4.535 13 H 0.074 0.926 14 C 0.086 3.914 15 N -0.754 5.754 16 Si 0.916 3.084 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.266 1.266 20 C -0.147 4.147 21 C 0.015 3.985 22 H 0.112 0.888 23 H 0.127 0.873 24 H 0.118 0.882 25 H 0.384 0.616 26 H 0.127 0.873 27 H 0.130 0.870 28 H 0.398 0.602 29 H 0.276 0.724 30 H 0.151 0.849 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.586 -3.264 -8.800 13.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.828 4.828 2 S 2.593 3.407 3 N -1.111 6.111 4 O -0.958 6.958 5 C -0.705 4.705 6 C -0.046 4.046 7 C -0.213 4.213 8 C 0.149 3.851 9 N -0.335 5.335 10 C 0.343 3.657 11 O -0.434 6.434 12 C -0.570 4.570 13 H 0.092 0.908 14 C -0.137 4.137 15 N -0.381 5.381 16 Si 0.740 3.260 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.170 4.170 21 C -0.006 4.006 22 H 0.131 0.869 23 H 0.146 0.854 24 H 0.137 0.863 25 H 0.210 0.790 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.169 0.831 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.588 -2.409 -8.844 12.561 hybrid contribution -0.811 -0.958 0.649 1.413 sum -9.399 -3.367 -8.195 12.916 Atomic orbital electron populations 1.30805 1.31352 1.09970 1.10710 1.09007 0.77860 0.78328 0.75533 1.71956 1.60039 1.25537 1.53579 1.93474 1.72130 1.80689 1.49484 1.27655 1.07872 1.14948 1.20052 1.20447 0.97036 0.92773 0.94349 1.20900 0.96101 1.05298 0.99002 1.18336 0.90263 0.91265 0.85281 1.44520 1.56776 1.14439 1.17721 1.18499 0.78063 0.86701 0.82410 1.90675 1.60922 1.14789 1.77023 1.20828 1.34380 0.96025 1.05778 0.90789 1.25762 0.94550 0.94574 0.98780 1.69951 1.28438 1.07055 1.32704 0.86282 0.79538 0.79656 0.80535 1.19008 1.20252 1.19059 1.21502 1.02037 0.98707 0.94718 1.20706 0.92075 0.94871 0.92970 0.86947 0.85438 0.86319 0.79040 0.85556 0.85187 0.76757 0.91356 0.83104 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -5.52 10.25 101.05 1.04 -4.49 16 2 S 2.41 30.45 5.12 -107.50 -0.55 29.90 16 3 N -1.29 -18.56 13.60 60.35 0.82 -17.74 16 4 O -0.97 -16.34 18.09 -35.23 -0.64 -16.97 16 5 C -0.60 -8.93 5.95 -39.52 -0.24 -9.17 16 6 C -0.03 -0.33 9.45 -39.61 -0.37 -0.70 16 7 C -0.19 -2.83 9.97 -39.35 -0.39 -3.22 16 8 C 0.25 4.77 6.28 -83.77 -0.53 4.25 16 9 N -0.69 -14.14 5.32 -11.20 -0.06 -14.20 16 10 C 0.54 13.87 7.47 -13.08 -0.10 13.78 16 11 O -0.55 -16.29 12.70 5.15 0.07 -16.23 16 12 C -0.53 -13.71 9.54 -35.69 -0.34 -14.06 16 13 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 14 C 0.09 2.19 5.50 -17.36 -0.10 2.10 16 15 N -0.75 -20.94 11.82 55.55 0.66 -20.28 16 16 Si 0.92 18.54 29.56 -169.99 -5.02 13.52 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 20 C -0.15 -2.96 8.65 -39.35 -0.34 -3.30 16 21 C 0.01 0.25 9.55 -39.62 -0.38 -0.12 16 22 H 0.11 0.71 7.44 -51.92 -0.39 0.32 16 23 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.12 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.38 4.80 8.92 -21.58 -0.19 4.61 16 26 H 0.13 1.05 6.95 -52.49 -0.36 0.69 16 27 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 28 H 0.40 6.70 8.79 -40.82 -0.36 6.34 16 29 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16 30 H 0.15 3.44 6.42 -52.49 -0.34 3.10 16 31 H 0.14 2.33 7.88 -52.48 -0.41 1.92 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -35.51 287.01 -5.01 -40.53 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -2.87 Total: 12.09 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.74 Total: -14.94 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 1.42 Total: -52.22 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.57 Total: -33.20 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: 30.45 SS G_CDS: -0.55 Total: 29.90 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -35.51 -5.01 -40.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626275309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.046 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds