Wall clock time and date at job start Mon Mar 30 2020 02:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 N 1.49360 * 108.32820 * 2 1 4 4 O 1.42108 * 114.65061 * 238.90037 * 2 1 3 5 5 C 1.76197 * 108.33742 * 117.79178 * 2 1 3 6 6 C 1.38330 * 119.91391 * 29.71893 * 5 2 1 7 7 C 1.38061 * 120.07995 * 179.76572 * 6 5 2 8 8 C 1.39026 * 119.91913 * 0.49581 * 7 6 5 9 9 N 1.39535 * 120.08509 * 179.74097 * 8 7 6 10 10 C 1.34770 * 119.99975 * 213.41446 * 9 8 7 11 11 O 1.21741 * 119.99991 * 5.27308 * 10 9 8 12 12 C 1.46167 * 120.00088 * 185.28014 * 10 9 8 13 13 H 1.08006 * 119.99823 * 359.97438 * 12 10 9 14 14 C 1.40122 * 120.00154 * 179.97438 * 12 10 9 15 15 N 1.30630 * 120.00136 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99908 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46739 * 60.00083 * 16 14 12 18 18 H 1.48497 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47452 * 300.00241 * 16 14 12 20 20 C 1.39030 * 119.82942 * 359.76355 * 8 7 6 21 21 C 1.38060 * 119.91681 * 0.02562 * 20 8 7 22 22 H 1.09006 * 109.46886 * 181.10176 * 1 2 3 23 23 H 1.08992 * 109.47390 * 301.09842 * 1 2 3 24 24 H 1.08998 * 109.47464 * 61.10602 * 1 2 3 25 25 H 0.97000 * 119.99932 * 297.52913 * 3 2 1 26 26 H 1.08000 * 119.96113 * 0.02562 * 6 5 2 27 27 H 1.08006 * 120.03636 * 180.25207 * 7 6 5 28 28 H 0.96993 * 119.99779 * 33.41344 * 9 8 7 29 29 H 0.96997 * 120.00381 * 180.02562 * 15 14 12 30 30 H 1.07997 * 120.03598 * 179.97438 * 20 8 7 31 31 H 1.08004 * 119.95345 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 7 2.2836 1.4178 0.0000 4 8 2.4067 -0.6671 -1.1059 5 6 2.3683 -0.7798 1.4796 6 6 1.5969 -1.7637 2.0715 7 6 2.0303 -2.3804 3.2282 8 6 3.2386 -2.0042 3.8038 9 7 3.6773 -2.6214 4.9758 10 6 4.3855 -1.9196 5.8825 11 8 4.5604 -0.7250 5.7260 12 6 4.9436 -2.5927 7.0539 13 1 4.7881 -3.6524 7.1929 14 6 5.6803 -1.8631 7.9964 15 7 5.8688 -0.5814 7.8280 16 14 6.3930 -2.7232 9.4937 17 1 7.3289 -3.7888 9.0535 18 1 7.1229 -1.7371 10.3303 19 1 5.2931 -3.3274 10.2877 20 6 4.0085 -1.0112 3.2088 21 6 3.5706 -0.4021 2.0497 22 1 -0.3633 -1.0275 0.0198 23 1 -0.3634 0.5308 0.8799 24 1 -0.3634 0.4965 -0.8997 25 1 2.0676 2.0003 -0.7449 26 1 0.6565 -2.0528 1.6260 27 1 1.4293 -3.1514 3.6876 28 1 3.4726 -3.5556 5.1378 29 1 6.3791 -0.0764 8.4802 30 1 4.9475 -0.7160 3.6532 31 1 4.1680 0.3697 1.5873 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626275309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:17 Heat of formation + Delta-G solvation = -32.478909 kcal Electronic energy + Delta-G solvation = -17575.917573 eV Core-core repulsion = 14563.466273 eV Total energy + Delta-G solvation = -3012.451300 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.99340 -38.89509 -37.16451 -35.50257 -34.60936 -32.97306 -32.10765 -31.05672 -29.91952 -28.36641 -24.40869 -23.85802 -21.85017 -19.89572 -19.59161 -18.34270 -17.70299 -17.47952 -17.25424 -16.45131 -16.08783 -15.70977 -15.45340 -14.90321 -14.70102 -14.33394 -14.14032 -13.95333 -13.88820 -13.66211 -13.21585 -12.80907 -12.77795 -12.64992 -12.38104 -12.10000 -11.88936 -11.35412 -10.95707 -10.41134 -10.16141 -9.93634 -9.89096 -9.15351 -8.41583 -7.00920 -1.03350 -0.12794 0.36721 1.39890 1.41667 1.55145 1.99858 2.17623 2.23568 2.59573 2.76758 3.01380 3.48693 3.51884 3.81198 3.87061 4.18464 4.29477 4.33927 4.42320 4.59892 4.86028 4.96607 5.03402 5.14376 5.21419 5.34460 5.63770 5.73938 6.08955 6.17681 6.56750 6.72969 7.21419 8.25503 8.51139 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.052183 B = 0.003983 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.447263 B = 7028.258887 C = 7297.563368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.433 3.567 3 N -1.344 6.344 4 O -1.019 7.019 5 C -0.611 4.611 6 C -0.010 4.010 7 C -0.178 4.178 8 C 0.217 3.783 9 N -0.688 5.688 10 C 0.524 3.476 11 O -0.603 6.603 12 C -0.562 4.562 13 H 0.098 0.902 14 C 0.030 3.970 15 N -0.811 5.811 16 Si 1.002 2.998 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.251 1.251 20 C -0.180 4.180 21 C -0.001 4.001 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.145 0.855 25 H 0.390 0.610 26 H 0.193 0.807 27 H 0.170 0.830 28 H 0.415 0.585 29 H 0.279 0.721 30 H 0.104 0.896 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 -5.462 -9.392 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.621 3.379 3 N -1.170 6.170 4 O -1.004 7.004 5 C -0.708 4.708 6 C -0.030 4.030 7 C -0.200 4.200 8 C 0.117 3.883 9 N -0.331 5.331 10 C 0.331 3.669 11 O -0.488 6.488 12 C -0.597 4.597 13 H 0.116 0.884 14 C -0.187 4.187 15 N -0.440 5.440 16 Si 0.821 3.179 17 H -0.178 1.178 18 H -0.201 1.201 19 H -0.175 1.175 20 C -0.202 4.202 21 C -0.022 4.022 22 H 0.168 0.832 23 H 0.167 0.833 24 H 0.163 0.837 25 H 0.217 0.783 26 H 0.210 0.790 27 H 0.188 0.812 28 H 0.252 0.748 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.271 -4.648 -9.470 16.182 hybrid contribution 0.126 -0.256 0.624 0.686 sum -12.145 -4.904 -8.846 15.805 Atomic orbital electron populations 1.30494 1.22814 1.13390 1.13239 1.07704 0.80217 0.76596 0.73352 1.71694 1.65739 1.25975 1.53615 1.93432 1.75277 1.81202 1.50515 1.28236 1.06705 1.15136 1.20744 1.21222 0.98557 0.90355 0.92888 1.21338 0.94141 1.05390 0.99098 1.18614 0.92262 0.92006 0.85418 1.43938 1.56520 1.14963 1.17647 1.18822 0.78174 0.86403 0.83458 1.90637 1.62796 1.16987 1.78387 1.21410 1.34778 0.97331 1.06160 0.88404 1.27026 0.94339 0.95066 1.02284 1.70128 1.30016 1.09401 1.34446 0.84994 0.78948 0.78296 0.75682 1.17799 1.20061 1.17450 1.21239 1.01462 1.00970 0.96548 1.20662 0.93855 0.95054 0.92604 0.83182 0.83300 0.83702 0.78277 0.78956 0.81240 0.74828 0.91100 0.87818 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.00 10.25 113.37 1.16 -4.84 16 2 S 2.43 55.37 5.12 -56.49 -0.29 55.08 16 3 N -1.34 -38.26 13.60 37.02 0.50 -37.76 16 4 O -1.02 -32.72 18.09 -148.98 -2.69 -35.41 16 5 C -0.61 -17.05 5.95 22.31 0.13 -16.92 16 6 C -0.01 -0.22 9.45 22.25 0.21 -0.01 16 7 C -0.18 -4.76 9.97 22.42 0.22 -4.54 16 8 C 0.22 8.45 6.28 38.29 0.24 8.69 16 9 N -0.69 -28.93 5.32 -307.54 -1.64 -30.57 16 10 C 0.52 28.64 7.47 86.30 0.64 29.29 16 11 O -0.60 -38.38 12.70 -4.48 -0.06 -38.43 16 12 C -0.56 -29.62 9.54 24.79 0.24 -29.38 16 13 H 0.10 4.48 7.85 -2.91 -0.02 4.46 16 14 C 0.03 1.56 5.50 85.33 0.47 2.03 16 15 N -0.81 -47.49 11.82 21.85 0.26 -47.23 16 16 Si 1.00 38.34 29.56 68.60 2.03 40.36 16 17 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 18 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 20 C -0.18 -7.86 8.65 22.42 0.19 -7.67 16 21 C 0.00 -0.06 9.55 22.25 0.21 0.16 16 22 H 0.15 0.50 7.44 -2.39 -0.02 0.48 16 23 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.39 9.63 8.92 -104.94 -0.94 8.70 16 26 H 0.19 1.58 6.95 -2.91 -0.02 1.56 16 27 H 0.17 3.18 8.06 -2.91 -0.02 3.16 16 28 H 0.41 13.94 8.79 -92.71 -0.82 13.12 16 29 H 0.28 14.84 8.29 -92.71 -0.77 14.07 16 30 H 0.10 5.42 6.42 -2.91 -0.02 5.40 16 31 H 0.13 4.89 7.88 -2.91 -0.02 4.87 16 Total: -1.00 -86.94 287.01 1.27 -85.67 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.56 Total: 31.48 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 3.73 Total: -23.19 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -0.87 Total: -115.55 kcal Atomic # 8 Polarization: -71.10 SS G_CDS: -2.75 Total: -73.85 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 16 Polarization: 55.37 SS G_CDS: -0.29 Total: 55.08 kcal Total: -86.94 1.27 -85.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626275309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.190 kcal (2) G-P(sol) polarization free energy of solvation -86.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds