Wall clock time and date at job start Mon Mar 30 2020 01:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46488 * 120.00235 * 2 1 4 4 C 1.50702 * 109.47086 * 269.99519 * 3 2 1 5 5 H 1.07999 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00282 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99744 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46777 * 90.00060 * 8 6 4 10 10 H 1.48506 * 109.46944 * 209.99555 * 8 6 4 11 11 H 1.48492 * 109.47473 * 329.99792 * 8 6 4 12 12 C 1.34782 * 119.99481 * 179.97438 * 2 1 3 13 13 S 1.71199 * 119.99740 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00119 * 0.02562 * 12 2 1 15 15 C 1.40006 * 119.99889 * 184.12660 * 14 12 2 16 16 C 1.38863 * 120.04417 * 135.07322 * 15 14 12 17 17 C 1.38109 * 119.95211 * 180.23146 * 16 15 14 18 18 C 1.38473 * 120.04703 * 359.51448 * 17 16 15 19 19 F 1.35101 * 119.95333 * 180.25056 * 18 17 16 20 20 C 1.38475 * 120.09200 * 0.23205 * 18 17 16 21 21 C 1.38116 * 120.04639 * 0.02562 * 20 18 17 22 22 H 1.08992 * 109.47160 * 270.00399 * 1 2 3 23 23 H 1.08998 * 109.46412 * 30.00243 * 1 2 3 24 24 H 1.09000 * 109.47179 * 150.00032 * 1 2 3 25 25 H 1.08993 * 109.47555 * 29.99602 * 3 2 1 26 26 H 1.09007 * 109.47344 * 150.00005 * 3 2 1 27 27 H 0.96997 * 119.99907 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00066 * 4.13264 * 14 12 2 29 29 H 1.07998 * 120.01886 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.97561 * 179.79090 * 17 16 15 31 31 H 1.08000 * 119.97846 * 180.02562 * 20 18 17 32 32 H 1.08001 * 120.02547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4489 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1272 2.8772 -1.6728 7 7 3.5545 3.6174 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3082 4.2603 -3.8999 10 1 4.6987 4.1990 -3.4969 11 1 3.5542 2.2198 -4.3052 12 6 2.1389 -1.1673 0.0005 13 16 3.8509 -1.1674 -0.0001 14 7 1.4649 -2.3345 0.0005 15 6 2.1621 -3.5454 0.0883 16 6 1.7190 -4.5420 0.9478 17 6 2.4110 -5.7340 1.0364 18 6 3.5401 -5.9395 0.2616 19 9 4.2126 -7.1082 0.3461 20 6 3.9806 -4.9490 -0.6000 21 6 3.2946 -3.7534 -0.6877 22 1 -0.3633 0.0001 1.0276 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6086 2.0283 0.5137 26 1 3.1500 1.1383 0.5139 27 1 4.0313 4.4432 -0.8505 28 1 0.4968 -2.3355 -0.0604 29 1 0.8358 -4.3838 1.5489 30 1 2.0686 -6.5080 1.7072 31 1 4.8613 -5.1113 -1.2037 32 1 3.6383 -2.9813 -1.3601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013658400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:39 Heat of formation + Delta-G solvation = 13.236297 kcal Electronic energy + Delta-G solvation = -17544.429799 eV Core-core repulsion = 14546.333649 eV Total energy + Delta-G solvation = -2998.096150 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.79900 -39.94149 -38.09023 -35.06458 -32.66621 -31.11336 -29.28695 -28.35674 -26.78375 -23.83892 -23.12649 -21.93071 -21.02614 -18.28063 -17.70118 -17.37624 -16.67171 -16.07595 -15.53003 -15.47797 -14.65682 -14.46641 -14.16006 -13.78974 -13.49612 -13.38074 -12.79162 -12.67769 -12.34265 -12.20148 -11.71540 -11.44373 -11.09126 -10.91858 -10.76286 -10.43161 -10.21045 -9.92775 -9.06611 -9.00083 -8.51331 -8.00101 -7.03169 -6.32463 -6.12275 -4.16996 1.05873 1.37112 2.04072 2.51637 3.14850 3.26602 3.35118 3.39298 3.64901 3.73502 4.35442 4.39179 4.80995 4.91352 5.00955 5.23705 5.28545 5.37712 5.43106 5.58499 5.71116 5.94370 6.14858 6.21491 6.40703 6.50387 6.59684 7.00897 7.04450 7.35781 7.42291 7.79990 7.82209 8.04720 8.81274 9.46476 10.96276 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.004798 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.335171 B = 5834.055674 C = 6322.978538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.535 5.535 3 C 0.235 3.765 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.889 5.889 8 Si 0.901 3.099 9 H -0.282 1.282 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.549 3.451 13 S -0.627 6.627 14 N -0.653 5.653 15 C 0.132 3.868 16 C -0.103 4.103 17 C -0.156 4.156 18 C 0.093 3.907 19 F -0.145 7.145 20 C -0.150 4.150 21 C -0.039 4.039 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.265 0.735 28 H 0.401 0.599 29 H 0.129 0.871 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.542 -14.663 2.161 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.238 5.238 3 C 0.116 3.884 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.208 1.208 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.191 3.809 13 S -0.491 6.491 14 N -0.284 5.284 15 C 0.037 3.963 16 C -0.125 4.125 17 C -0.176 4.176 18 C 0.073 3.927 19 F -0.124 7.124 20 C -0.171 4.171 21 C -0.063 4.063 22 H 0.082 0.918 23 H 0.113 0.887 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.240 0.760 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -7.356 -14.242 2.237 16.185 hybrid contribution -1.117 0.273 -0.874 1.444 sum -8.473 -13.969 1.363 16.394 Atomic orbital electron populations 1.22022 0.80817 1.03766 1.02008 1.47822 1.06242 1.06636 1.63102 1.20062 0.93985 0.74925 0.99399 1.21096 1.37620 1.06462 0.90996 0.92505 1.24830 0.94902 0.96199 0.97513 1.69914 1.37781 1.14250 1.30785 0.86455 0.77718 0.78609 0.84413 1.20791 1.20927 1.19793 1.22316 0.95671 0.81176 0.81698 1.93148 0.89562 1.92482 1.73949 1.42271 1.09234 1.02784 1.74118 1.17403 0.96155 0.84796 0.97919 1.20693 1.01216 0.93259 0.97289 1.20714 0.96032 0.98828 1.02036 1.17747 0.92953 0.82488 0.99526 1.91470 1.79537 1.45966 1.95396 1.20986 1.02385 0.92763 1.00985 1.21596 0.92471 0.95048 0.97163 0.91816 0.88659 0.92245 0.94179 0.90221 0.92524 0.75982 0.85267 0.84837 0.84547 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.24 59.85 0.61 1.40 16 2 N -0.54 -10.16 2.86 -185.00 -0.53 -10.69 16 3 C 0.23 5.66 4.92 -5.20 -0.03 5.64 16 4 C -0.52 -13.90 9.39 -34.44 -0.32 -14.23 16 5 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.07 1.88 5.46 -17.82 -0.10 1.79 16 7 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.55 10.48 7.56 -86.91 -0.66 9.82 16 13 S -0.63 -14.76 24.22 -107.50 -2.60 -17.36 16 14 N -0.65 -9.35 5.20 -11.38 -0.06 -9.41 16 15 C 0.13 1.86 5.94 -83.66 -0.50 1.37 16 16 C -0.10 -1.18 9.97 -39.40 -0.39 -1.58 16 17 C -0.16 -1.77 10.02 -39.54 -0.40 -2.16 16 18 C 0.09 1.20 7.30 -39.41 -0.29 0.91 16 19 F -0.14 -1.90 17.27 2.25 0.04 -1.86 16 20 C -0.15 -2.06 10.02 -39.54 -0.40 -2.45 16 21 C -0.04 -0.60 7.87 -39.40 -0.31 -0.91 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 24 H 0.06 0.59 6.31 -51.93 -0.33 0.26 16 25 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.08 2.20 6.58 -51.93 -0.34 1.86 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.40 4.28 6.52 -40.82 -0.27 4.02 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 31 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.16 2.87 6.08 -43.91 -0.27 2.60 16 LS Contribution 292.42 15.07 4.41 4.41 Total: -1.00 -32.03 292.42 -9.08 -41.10 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -3.28 Total: 2.66 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.77 Total: -0.41 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.15 Total: -44.85 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -14.76 SS G_CDS: -2.60 Total: -17.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.03 -9.08 -41.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.339 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds