Wall clock time and date at job start Mon Mar 30 2020 01:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46488 * 120.00235 * 2 1 4 4 C 1.50702 * 109.47086 * 269.99519 * 3 2 1 5 5 H 1.07999 * 120.00051 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99968 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00282 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99744 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46777 * 90.00060 * 8 6 4 10 10 H 1.48506 * 109.46944 * 209.99555 * 8 6 4 11 11 H 1.48492 * 109.47473 * 329.99792 * 8 6 4 12 12 C 1.34782 * 119.99481 * 179.97438 * 2 1 3 13 13 S 1.71199 * 119.99740 * 179.97438 * 12 2 1 14 14 N 1.34777 * 120.00119 * 0.02562 * 12 2 1 15 15 C 1.40006 * 119.99889 * 184.12660 * 14 12 2 16 16 C 1.38863 * 120.04417 * 135.07322 * 15 14 12 17 17 C 1.38109 * 119.95211 * 180.23146 * 16 15 14 18 18 C 1.38473 * 120.04703 * 359.51448 * 17 16 15 19 19 F 1.35101 * 119.95333 * 180.25056 * 18 17 16 20 20 C 1.38475 * 120.09200 * 0.23205 * 18 17 16 21 21 C 1.38116 * 120.04639 * 0.02562 * 20 18 17 22 22 H 1.08992 * 109.47160 * 270.00399 * 1 2 3 23 23 H 1.08998 * 109.46412 * 30.00243 * 1 2 3 24 24 H 1.09000 * 109.47179 * 150.00032 * 1 2 3 25 25 H 1.08993 * 109.47555 * 29.99602 * 3 2 1 26 26 H 1.09007 * 109.47344 * 150.00005 * 3 2 1 27 27 H 0.96997 * 119.99907 * 180.02562 * 7 6 4 28 28 H 0.97005 * 120.00066 * 4.13264 * 14 12 2 29 29 H 1.07998 * 120.01886 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.97561 * 179.79090 * 17 16 15 31 31 H 1.08000 * 119.97846 * 180.02562 * 20 18 17 32 32 H 1.08001 * 120.02547 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4489 1.7036 -1.4208 5 1 2.0976 1.0960 -2.2417 6 6 3.1272 2.8772 -1.6728 7 7 3.5545 3.6174 -0.6732 8 14 3.4380 3.4167 -3.4340 9 1 2.3082 4.2603 -3.8999 10 1 4.6987 4.1990 -3.4969 11 1 3.5542 2.2198 -4.3052 12 6 2.1389 -1.1673 0.0005 13 16 3.8509 -1.1674 -0.0001 14 7 1.4649 -2.3345 0.0005 15 6 2.1621 -3.5454 0.0883 16 6 1.7190 -4.5420 0.9478 17 6 2.4110 -5.7340 1.0364 18 6 3.5401 -5.9395 0.2616 19 9 4.2126 -7.1082 0.3461 20 6 3.9806 -4.9490 -0.6000 21 6 3.2946 -3.7534 -0.6877 22 1 -0.3633 0.0001 1.0276 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6086 2.0283 0.5137 26 1 3.1500 1.1383 0.5139 27 1 4.0313 4.4432 -0.8505 28 1 0.4968 -2.3355 -0.0604 29 1 0.8358 -4.3838 1.5489 30 1 2.0686 -6.5080 1.7072 31 1 4.8613 -5.1113 -1.2037 32 1 3.6383 -2.9813 -1.3601 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013658400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:38 Heat of formation + Delta-G solvation = -5.567254 kcal Electronic energy + Delta-G solvation = -17545.245182 eV Core-core repulsion = 14546.333649 eV Total energy + Delta-G solvation = -2998.911533 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.83452 -41.18647 -39.40096 -36.45451 -34.63664 -32.13709 -30.63723 -29.78293 -28.31184 -25.53040 -24.29832 -23.19938 -22.42586 -19.56339 -19.00375 -18.72529 -18.44029 -17.19187 -17.07530 -16.51761 -16.42105 -15.91381 -15.39418 -15.22095 -14.54343 -14.49081 -14.14423 -13.86634 -13.77914 -13.54762 -13.22745 -12.91035 -12.83512 -12.61105 -12.22104 -12.10172 -12.03301 -11.72870 -10.61118 -10.43666 -10.09966 -9.24018 -8.78491 -8.20538 -8.06304 -6.31666 -0.10761 0.36153 0.62204 1.01277 1.37765 1.42596 1.50731 1.65589 2.33765 2.44771 2.65909 3.13252 3.34501 3.84161 3.97338 3.99610 4.27619 4.31657 4.42565 4.51725 4.64848 4.84709 5.00389 5.16062 5.18405 5.24533 5.32528 5.34399 5.60259 5.75163 5.81627 5.99202 6.05297 6.41858 6.72918 7.35190 8.87328 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030516 B = 0.004798 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.335171 B = 5834.055674 C = 6322.978538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.538 5.538 3 C 0.251 3.749 4 C -0.527 4.527 5 H 0.051 0.949 6 C 0.018 3.982 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.572 3.428 13 S -0.734 6.734 14 N -0.621 5.621 15 C 0.109 3.891 16 C -0.083 4.083 17 C -0.144 4.144 18 C 0.088 3.912 19 F -0.146 7.146 20 C -0.159 4.159 21 C -0.057 4.057 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.266 0.734 28 H 0.424 0.576 29 H 0.169 0.831 30 H 0.169 0.831 31 H 0.139 0.861 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 -16.350 2.497 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.240 5.240 3 C 0.130 3.870 4 C -0.566 4.566 5 H 0.069 0.931 6 C -0.182 4.182 7 N -0.563 5.563 8 Si 0.786 3.214 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.209 3.791 13 S -0.601 6.601 14 N -0.252 5.252 15 C 0.015 3.985 16 C -0.104 4.104 17 C -0.164 4.164 18 C 0.068 3.932 19 F -0.124 7.124 20 C -0.180 4.180 21 C -0.081 4.081 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.268 0.732 29 H 0.187 0.813 30 H 0.186 0.814 31 H 0.157 0.843 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.331 -15.998 2.567 19.216 hybrid contribution -0.310 0.645 -0.942 1.183 sum -10.641 -15.353 1.624 18.751 Atomic orbital electron populations 1.22430 0.76596 1.05577 1.04627 1.47614 1.08601 1.04992 1.62772 1.19465 0.92877 0.76971 0.97646 1.21328 1.37075 1.06178 0.91969 0.93091 1.25624 0.94846 0.96532 1.01172 1.70020 1.38791 1.14754 1.32689 0.85514 0.77929 0.78058 0.79879 1.18866 1.21115 1.20186 1.21653 0.93749 0.82545 0.81121 1.93366 0.94889 1.93668 1.78131 1.42013 1.10155 1.01306 1.71774 1.17638 0.96418 0.85197 0.99264 1.21029 1.01741 0.91789 0.95842 1.21123 0.94641 0.99419 1.01216 1.17900 0.93556 0.82140 0.99570 1.91472 1.79719 1.45869 1.95375 1.21022 1.02530 0.92785 1.01660 1.21346 0.93820 0.95076 0.97831 0.88666 0.88944 0.88476 0.94404 0.94243 0.92501 0.73196 0.81335 0.81375 0.84309 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.17 10.24 127.77 1.31 2.48 16 2 N -0.54 -19.89 2.86 -739.22 -2.11 -22.00 16 3 C 0.25 12.35 4.92 85.64 0.42 12.78 16 4 C -0.53 -28.42 9.39 25.60 0.24 -28.18 16 5 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 6 C 0.02 1.00 5.46 84.66 0.46 1.46 16 7 N -0.92 -54.11 13.29 21.45 0.28 -53.83 16 8 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.57 21.53 7.56 179.05 1.35 22.89 16 13 S -0.73 -36.22 24.22 -56.49 -1.37 -37.59 16 14 N -0.62 -16.25 5.20 -189.93 -0.99 -17.24 16 15 C 0.11 2.86 5.94 38.13 0.23 3.09 16 16 C -0.08 -1.56 9.97 22.39 0.22 -1.34 16 17 C -0.14 -2.69 10.02 22.30 0.22 -2.47 16 18 C 0.09 2.11 7.30 22.38 0.16 2.28 16 19 F -0.15 -3.55 17.27 44.97 0.78 -2.77 16 20 C -0.16 -4.37 10.02 22.30 0.22 -4.15 16 21 C -0.06 -1.80 7.87 22.39 0.18 -1.62 16 22 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.09 2.23 8.07 -2.39 -0.02 2.21 16 24 H 0.10 1.47 6.31 -2.39 -0.02 1.45 16 25 H 0.04 1.87 8.07 -2.39 -0.02 1.85 16 26 H 0.04 2.29 6.58 -2.38 -0.02 2.27 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.42 7.18 6.52 -92.70 -0.60 6.57 16 29 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 30 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 31 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.13 4.89 6.08 -8.36 -0.05 4.84 16 Total: -1.00 -74.22 292.42 4.16 -70.07 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.51 Total: 9.93 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: 5.02 Total: 7.21 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -2.81 Total: -93.07 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -36.22 SS G_CDS: -1.37 Total: -37.59 kcal Total: -74.22 4.16 -70.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013658400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.500 kcal (2) G-P(sol) polarization free energy of solvation -74.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds