Wall clock time and date at job start Mon Mar 30 2020 01:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46638 * 2 1 4 4 C 1.50700 * 109.46810 * 119.99739 * 2 1 3 5 5 H 1.08000 * 119.99718 * 120.00307 * 4 2 1 6 6 C 1.37874 * 120.00188 * 299.99963 * 4 2 1 7 7 N 1.31510 * 120.00154 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99966 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47212 * 59.99928 * 8 6 4 10 10 H 1.48497 * 109.47196 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46744 * 299.99941 * 8 6 4 12 12 N 1.46501 * 109.47141 * 239.99990 * 2 1 3 13 13 C 1.34773 * 120.00078 * 84.99979 * 12 2 1 14 14 O 1.21585 * 119.99954 * 0.02562 * 13 12 2 15 15 N 1.34778 * 119.99914 * 180.02562 * 13 12 2 16 16 C 1.40005 * 119.99808 * 185.63160 * 15 13 12 17 17 C 1.38845 * 120.07399 * 24.79173 * 16 15 13 18 18 C 1.38125 * 119.93852 * 179.97438 * 17 16 15 19 19 C 1.38292 * 120.09399 * 0.02562 * 18 17 16 20 20 C 1.38259 * 120.14542 * 359.97438 * 19 18 17 21 21 C 1.38225 * 120.06115 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 120.04724 * 179.97438 * 21 20 19 23 23 H 1.09005 * 109.47052 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47417 * 299.99976 * 1 2 3 25 25 H 1.08998 * 109.46907 * 60.00294 * 1 2 3 26 26 H 0.97002 * 119.99913 * 179.97438 * 7 6 4 27 27 H 0.97002 * 119.99842 * 264.99934 * 12 2 1 28 28 H 0.96992 * 119.99763 * 5.62702 * 15 13 12 29 29 H 1.07996 * 120.03306 * 359.96390 * 17 16 15 30 30 H 1.07998 * 119.94760 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.92683 * 180.02562 * 19 18 17 32 32 H 1.08003 * 119.96584 * 179.72437 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8073 -1.1189 4.0079 10 1 1.8268 -0.4199 5.2205 11 1 1.8278 -2.5197 4.0082 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.8583 1.1615 -2.4116 15 7 2.5959 -0.6538 -3.4577 16 6 2.8418 0.0684 -4.6316 17 6 3.1303 1.4249 -4.5664 18 6 3.3731 2.1346 -5.7263 19 6 3.3286 1.4959 -6.9521 20 6 3.0416 0.1452 -7.0213 21 6 2.7977 -0.5710 -5.8645 22 17 2.4368 -2.2667 -5.9518 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7081 1.1609 3.4844 27 1 2.2491 -1.6318 -1.1526 28 1 2.7485 -1.6114 -3.4363 29 1 3.1648 1.9249 -3.6098 30 1 3.5979 3.1897 -5.6758 31 1 3.5192 2.0533 -7.8573 32 1 3.0032 -0.3497 -7.9805 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050337020.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:20 Heat of formation + Delta-G solvation = -30.158040 kcal Electronic energy + Delta-G solvation = -17688.563611 eV Core-core repulsion = 14674.169246 eV Total energy + Delta-G solvation = -3014.394366 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.72587 -39.77057 -37.45872 -36.95140 -35.76005 -34.36683 -31.68451 -31.37619 -29.68281 -27.34178 -24.56981 -23.69922 -22.65344 -21.59511 -19.85105 -19.01077 -17.92199 -17.54063 -16.87152 -16.62044 -16.01454 -15.77546 -15.19428 -15.12985 -14.60944 -14.52097 -14.39610 -13.77344 -13.07606 -12.97150 -12.94027 -12.76324 -12.58546 -12.41337 -12.27742 -12.14598 -11.97287 -11.62017 -11.12606 -11.03476 -10.60819 -9.89463 -9.77325 -9.01922 -8.17895 -6.35357 0.16267 0.33324 1.08090 1.45596 1.47874 1.55248 1.67148 2.09048 2.41840 2.77738 3.12721 3.32405 3.81077 4.10098 4.34889 4.39361 4.47222 4.71989 4.89294 4.92777 5.06866 5.11152 5.26787 5.36555 5.44695 5.53106 5.59160 5.63430 5.81365 5.94590 6.07145 6.16208 6.71142 7.11288 7.32549 7.57521 8.88417 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.032542 B = 0.004299 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.225166 B = 6511.099750 C = 6971.713866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.289 3.711 3 H 0.003 0.997 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.712 5.712 13 C 0.694 3.306 14 O -0.615 6.615 15 N -0.676 5.676 16 C 0.166 3.834 17 C -0.151 4.151 18 C -0.093 4.093 19 C -0.126 4.126 20 C -0.085 4.085 21 C -0.084 4.084 22 Cl -0.064 7.064 23 H 0.039 0.961 24 H 0.069 0.931 25 H 0.011 0.989 26 H 0.266 0.734 27 H 0.403 0.597 28 H 0.417 0.583 29 H 0.125 0.875 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.446 -4.347 -18.375 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.185 3.815 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.189 1.189 12 N -0.365 5.365 13 C 0.395 3.605 14 O -0.496 6.496 15 N -0.323 5.323 16 C 0.068 3.932 17 C -0.172 4.172 18 C -0.111 4.111 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.114 4.114 22 Cl -0.036 7.036 23 H 0.058 0.942 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.238 0.762 28 H 0.255 0.745 29 H 0.143 0.857 30 H 0.167 0.833 31 H 0.186 0.814 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.047 -3.366 -18.139 19.127 hybrid contribution 0.134 -1.164 1.253 1.715 sum 5.181 -4.530 -16.887 18.235 Atomic orbital electron populations 1.21931 0.98339 0.99455 0.99634 1.18298 0.90938 0.91803 0.80428 0.97865 1.21478 1.32852 1.13721 0.90633 0.90856 1.25769 0.94805 0.95555 1.02206 1.70039 1.36764 1.23828 1.24759 0.85379 0.78611 0.78667 0.77555 1.19618 1.21121 1.18945 1.45521 1.68598 1.14080 1.08257 1.16186 0.78327 0.85046 0.80954 1.90822 1.58006 1.16017 1.84757 1.42609 1.68522 1.12024 1.09168 1.17574 0.98967 0.92317 0.84293 1.21478 1.01746 0.92841 1.01139 1.21461 0.97019 1.01153 0.91496 1.21460 1.00527 0.93771 0.98687 1.21232 0.97833 0.94493 0.96836 1.20759 1.10907 0.86412 0.93342 1.98348 1.93519 1.13316 1.98375 0.94168 0.91216 0.96994 0.92455 0.76219 0.74540 0.85747 0.83292 0.81424 0.81901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.21 16 2 C 0.29 15.00 2.56 44.25 0.11 15.11 16 3 H 0.00 0.21 7.58 -2.39 -0.02 0.19 16 4 C -0.55 -28.85 8.73 25.60 0.22 -28.63 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.12 11.32 21.45 0.24 -51.87 16 8 Si 0.97 41.63 29.54 68.60 2.03 43.66 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 12 N -0.71 -30.08 5.07 -461.41 -2.34 -32.42 16 13 C 0.69 28.99 8.33 179.06 1.49 30.48 16 14 O -0.62 -30.47 13.17 -3.98 -0.05 -30.52 16 15 N -0.68 -21.94 5.20 -317.08 -1.65 -23.59 16 16 C 0.17 5.09 6.43 38.15 0.25 5.34 16 17 C -0.15 -4.80 8.72 22.39 0.20 -4.60 16 18 C -0.09 -2.12 10.04 22.26 0.22 -1.90 16 19 C -0.13 -2.18 10.04 22.29 0.22 -1.95 16 20 C -0.09 -1.59 9.82 22.27 0.22 -1.37 16 21 C -0.08 -2.06 6.34 22.44 0.14 -1.92 16 22 Cl -0.06 -1.39 27.78 -2.72 -0.08 -1.47 16 23 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 24 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.40 14.27 8.56 -92.71 -0.79 13.47 16 28 H 0.42 11.13 7.78 -92.71 -0.72 10.40 16 29 H 0.12 4.84 5.79 -2.91 -0.02 4.82 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.59 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -66.02 291.26 2.00 -64.02 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.35 Total: 26.49 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 4.19 Total: 5.71 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.75 Total: -107.89 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.05 Total: -30.52 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -66.02 2.00 -64.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050337020.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.862 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds