Wall clock time and date at job start Mon Mar 30 2020 01:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21508 * 119.99838 * 359.97438 * 14 13 3 16 16 C 1.48167 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.39263 * 119.71283 * 179.72717 * 16 14 13 18 18 C 1.38638 * 119.08654 * 179.72887 * 17 16 14 19 19 C 1.38554 * 118.50599 * 0.53335 * 18 17 16 20 20 C 1.38728 * 119.34087 * 359.72647 * 19 18 17 21 21 Cl 1.73606 * 119.56397 * 179.97438 * 20 19 18 22 22 N 1.31618 * 120.87197 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 30 30 H 1.07996 * 120.45760 * 359.97438 * 17 16 14 31 31 H 1.07997 * 120.74124 * 180.23413 * 18 17 16 32 32 H 1.08002 * 120.32711 * 179.75272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3410 2.6319 -0.4327 16 6 0.0434 3.3272 -2.6330 17 6 -1.2181 3.9061 -2.7474 18 6 -1.5690 4.5278 -3.9358 19 6 -0.6500 4.5391 -4.9727 20 6 0.5870 3.9379 -4.7912 21 17 1.7427 3.9481 -6.0867 22 7 0.8957 3.3589 -3.6502 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 2.2720 2.1231 -1.9978 30 1 -1.9119 3.8746 -1.9204 31 1 -2.5387 4.9886 -4.0524 32 1 -0.8941 5.0117 -5.9126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:16 Heat of formation + Delta-G solvation = -14.146640 kcal Electronic energy + Delta-G solvation = -17888.468367 eV Core-core repulsion = 14874.768308 eV Total energy + Delta-G solvation = -3013.700059 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54152 -38.60578 -36.73151 -35.12130 -33.10703 -32.18829 -31.37999 -30.58876 -27.09676 -24.72307 -23.58779 -22.88133 -20.77442 -19.39396 -18.20272 -17.04520 -16.43259 -15.85296 -15.27919 -15.07959 -14.99641 -14.30338 -14.06469 -13.68436 -13.19290 -12.68266 -12.30661 -12.13173 -11.72332 -11.48487 -11.44522 -11.25278 -10.95548 -10.84041 -10.33853 -10.20752 -10.15809 -10.06428 -9.63525 -9.18986 -9.10858 -9.03690 -8.49823 -7.85503 -6.11446 -4.20189 0.53616 0.92985 1.64088 2.99855 3.25862 3.33762 3.37444 3.76503 3.98014 4.28061 4.39025 4.64476 4.76381 4.94166 5.16230 5.20428 5.41967 5.73092 5.90534 6.25957 6.38508 6.44859 6.64268 7.03945 7.16016 7.31927 7.38661 7.43964 7.63923 7.74930 7.89721 8.16957 8.62997 8.75819 9.04474 9.46621 10.94099 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.005344 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.318763 B = 5238.091138 C = 6202.361914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.267 3.733 4 H 0.052 0.948 5 C -0.532 4.532 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.679 5.679 14 C 0.551 3.449 15 O -0.538 6.538 16 C 0.114 3.886 17 C -0.116 4.116 18 C -0.069 4.069 19 C -0.145 4.145 20 C 0.173 3.827 21 Cl -0.032 7.032 22 N -0.452 5.452 23 H 0.024 0.976 24 H 0.036 0.964 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.400 0.600 30 H 0.156 0.844 31 H 0.150 0.850 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 7.183 -14.036 17.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.165 3.835 4 H 0.070 0.930 5 C -0.571 4.571 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.326 5.326 14 C 0.334 3.666 15 O -0.417 6.417 16 C -0.025 4.025 17 C -0.137 4.137 18 C -0.095 4.095 19 C -0.166 4.166 20 C 0.006 3.994 21 Cl -0.003 7.003 22 N -0.166 5.166 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.119 0.881 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.234 0.766 30 H 0.174 0.826 31 H 0.168 0.832 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.663 6.629 -13.133 16.587 hybrid contribution 0.652 0.351 -0.579 0.940 sum -7.011 6.980 -13.713 16.909 Atomic orbital electron populations 1.21848 0.98369 0.98185 1.01121 1.21944 0.92605 0.99596 1.02522 1.18928 0.94571 0.89334 0.80643 0.93005 1.21270 0.90542 1.38918 1.06343 0.91857 1.24875 0.98668 0.94746 0.95332 1.69900 1.35054 1.37737 1.09361 0.86389 0.84816 0.77779 0.78133 1.19670 1.20892 1.20856 1.46467 1.13965 1.53262 1.18872 1.17721 0.83733 0.79949 0.85242 1.90768 1.51802 1.60576 1.38522 1.21681 0.90765 0.96917 0.93104 1.22289 0.96866 0.95572 0.99003 1.21613 0.99647 0.96435 0.91840 1.21982 0.92621 1.00759 1.01282 1.21636 0.89989 0.97648 0.90123 1.98412 1.60196 1.97009 1.44696 1.66947 1.35113 1.15440 0.99114 0.95697 0.94469 0.93033 0.88054 0.94853 0.92615 0.76556 0.82600 0.83218 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 6 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.68 11.29 55.43 0.63 -24.05 16 9 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.87 5.01 -55.77 -0.28 -15.15 16 14 C 0.55 11.29 6.38 -12.18 -0.08 11.21 16 15 O -0.54 -12.17 13.45 5.36 0.07 -12.09 16 16 C 0.11 1.90 6.75 -83.01 -0.56 1.34 16 17 C -0.12 -1.51 9.63 -39.05 -0.38 -1.89 16 18 C -0.07 -0.66 10.17 -39.32 -0.40 -1.06 16 19 C -0.15 -1.43 9.88 -39.28 -0.39 -1.82 16 20 C 0.17 2.25 7.27 -17.46 -0.13 2.12 16 21 Cl -0.03 -0.37 29.11 -51.86 -1.51 -1.88 16 22 N -0.45 -7.24 9.52 -6.94 -0.07 -7.30 16 23 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.40 8.29 7.87 -40.82 -0.32 7.97 16 30 H 0.16 1.92 7.64 -52.49 -0.40 1.52 16 31 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -29.58 290.52 -7.46 -37.05 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -3.36 Total: 5.60 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -2.31 Total: -2.35 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.28 Total: -46.51 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.51 Total: -1.88 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.58 -7.46 -37.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.901 kcal (2) G-P(sol) polarization free energy of solvation -29.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds