Wall clock time and date at job start Mon Mar 30 2020 01:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 120.00109 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99874 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46867 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46968 * 119.99877 * 9 7 5 12 12 H 1.48491 * 109.47133 * 239.99928 * 9 7 5 13 13 N 1.46499 * 109.46679 * 294.99474 * 3 2 1 14 14 C 1.34785 * 119.99572 * 85.00499 * 13 3 2 15 15 O 1.21508 * 119.99838 * 359.97438 * 14 13 3 16 16 C 1.48167 * 119.99767 * 179.97438 * 14 13 3 17 17 C 1.39263 * 119.71283 * 179.72717 * 16 14 13 18 18 C 1.38638 * 119.08654 * 179.72887 * 17 16 14 19 19 C 1.38554 * 118.50599 * 0.53335 * 18 17 16 20 20 C 1.38728 * 119.34087 * 359.72647 * 19 18 17 21 21 Cl 1.73606 * 119.56397 * 179.97438 * 20 19 18 22 22 N 1.31618 * 120.87197 * 0.02562 * 20 19 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.96997 * 119.99669 * 180.02562 * 8 7 5 29 29 H 0.96999 * 120.00274 * 264.99733 * 13 3 2 30 30 H 1.07996 * 120.45760 * 359.97438 * 17 16 14 31 31 H 1.07997 * 120.74124 * 180.23413 * 18 17 16 32 32 H 1.08002 * 120.32711 * 179.75272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 3.4062 0.3367 2.1730 9 14 6.0049 0.8813 1.3819 10 1 6.5986 1.5473 0.1948 11 1 6.3989 1.6168 2.6103 12 1 6.4970 -0.5174 1.4632 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3670 15 8 -0.3410 2.6319 -0.4327 16 6 0.0434 3.3272 -2.6330 17 6 -1.2181 3.9061 -2.7474 18 6 -1.5690 4.5278 -3.9358 19 6 -0.6500 4.5391 -4.9727 20 6 0.5870 3.9379 -4.7912 21 17 1.7427 3.9481 -6.0867 22 7 0.8957 3.3589 -3.6502 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0610 2.9499 29 1 2.2720 2.1231 -1.9978 30 1 -1.9119 3.8746 -1.9204 31 1 -2.5387 4.9886 -4.0524 32 1 -0.8941 5.0117 -5.9126 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177447.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:15 Heat of formation + Delta-G solvation = -33.808932 kcal Electronic energy + Delta-G solvation = -17889.320988 eV Core-core repulsion = 14874.768308 eV Total energy + Delta-G solvation = -3014.552680 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.70276 -40.12202 -37.67413 -36.98939 -34.51218 -33.76872 -32.84121 -32.00316 -29.03607 -26.06576 -24.85393 -24.42294 -22.35706 -21.22968 -19.70860 -18.17720 -18.03801 -17.14523 -16.87970 -16.53126 -16.30734 -16.02278 -15.41130 -14.97593 -14.62118 -14.37081 -13.88183 -13.51753 -13.22774 -13.11419 -12.91241 -12.74170 -12.68156 -12.36799 -12.18726 -12.09010 -11.63126 -11.35381 -11.08914 -11.06993 -10.62851 -10.53959 -10.13435 -9.67948 -8.18171 -6.35025 -0.49518 0.01581 0.70415 1.42674 1.43855 1.56045 1.73698 2.27302 2.47882 2.71325 3.11036 3.20252 3.74049 3.88175 3.95106 4.21385 4.37506 4.47686 4.55153 4.72476 4.88721 4.97439 5.04986 5.23206 5.36822 5.40658 5.50636 5.57854 5.75801 5.85790 6.13417 6.39475 6.70684 6.90427 7.27261 7.43173 8.87524 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021250 B = 0.005344 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.318763 B = 5238.091138 C = 6202.361914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.275 3.725 4 H 0.007 0.993 5 C -0.550 4.550 6 H 0.064 0.936 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.685 5.685 14 C 0.550 3.450 15 O -0.568 6.568 16 C 0.081 3.919 17 C -0.114 4.114 18 C -0.049 4.049 19 C -0.121 4.121 20 C 0.155 3.845 21 Cl -0.026 7.026 22 N -0.482 5.482 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.036 0.964 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.158 0.842 31 H 0.201 0.799 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.879 8.333 -16.426 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.588 4.588 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.201 1.201 13 N -0.332 5.332 14 C 0.335 3.665 15 O -0.449 6.449 16 C -0.057 4.057 17 C -0.135 4.135 18 C -0.074 4.074 19 C -0.141 4.141 20 C -0.013 4.013 21 Cl 0.002 6.998 22 N -0.196 5.196 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.095 0.905 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.240 0.760 30 H 0.176 0.824 31 H 0.218 0.782 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -8.451 7.788 -15.547 19.333 hybrid contribution 0.817 0.077 0.059 0.823 sum -7.633 7.864 -15.487 18.973 Atomic orbital electron populations 1.21679 0.96665 0.99417 1.00316 1.21787 0.94065 0.98795 1.01338 1.18527 0.93907 0.89462 0.80908 0.97506 1.21551 0.91361 1.39192 1.06725 0.91743 1.25716 1.03285 0.94206 0.94874 1.70031 1.36946 1.38196 1.09812 0.85336 0.79145 0.77970 0.78131 1.18999 1.20633 1.20148 1.46255 1.15081 1.54121 1.17780 1.18310 0.82564 0.78990 0.86640 1.90730 1.52360 1.61546 1.40240 1.21022 0.92758 0.99999 0.91906 1.22452 0.95233 0.95108 1.00733 1.22145 1.01287 0.94384 0.89613 1.22511 0.90661 0.98129 1.02812 1.22031 0.91522 0.98207 0.89494 1.98413 1.60389 1.97003 1.43945 1.66708 1.35962 1.16815 1.00123 0.93297 0.94167 0.94862 0.90493 0.94492 0.92426 0.76020 0.82416 0.78186 0.79286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 8.51 71.98 0.61 -5.01 16 2 C -0.12 -6.14 5.45 30.60 0.17 -5.97 16 3 C 0.27 14.66 2.24 44.25 0.10 14.75 16 4 H 0.01 0.43 7.58 -2.39 -0.02 0.42 16 5 C -0.55 -30.37 8.73 25.60 0.22 -30.15 16 6 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.08 5.29 84.66 0.45 1.52 16 8 N -0.91 -52.47 11.29 21.45 0.24 -52.22 16 9 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 10 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 N -0.69 -31.30 5.01 -448.66 -2.25 -33.55 16 14 C 0.55 23.32 6.38 86.88 0.55 23.87 16 15 O -0.57 -26.79 13.45 -3.74 -0.05 -26.84 16 16 C 0.08 2.66 6.75 41.89 0.28 2.94 16 17 C -0.11 -2.75 9.63 22.61 0.22 -2.53 16 18 C -0.05 -0.70 10.17 22.44 0.23 -0.47 16 19 C -0.12 -1.83 9.88 22.46 0.22 -1.61 16 20 C 0.15 3.68 7.27 84.84 0.62 4.29 16 21 Cl -0.03 -0.56 29.11 -2.72 -0.08 -0.64 16 22 N -0.48 -15.13 9.52 -175.86 -1.67 -16.80 16 23 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 25 H 0.03 1.60 7.84 -2.38 -0.02 1.58 16 26 H 0.08 4.30 5.95 -2.39 -0.01 4.28 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.40 17.46 7.87 -92.71 -0.73 16.73 16 30 H 0.16 3.68 7.64 -2.91 -0.02 3.66 16 31 H 0.20 0.91 8.06 -2.91 -0.02 0.88 16 32 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -67.75 290.52 2.31 -65.44 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.43 Total: 17.77 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 3.67 Total: 1.65 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -3.68 Total: -102.58 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.05 Total: -26.84 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -67.75 2.31 -65.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177447.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.630 kcal (2) G-P(sol) polarization free energy of solvation -67.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds