Wall clock time and date at job start Mon Mar 30 2020 00:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38247 * 120.04233 * 2 1 4 4 Cl 1.73602 * 119.97941 * 359.97438 * 3 2 1 5 5 C 1.38379 * 120.04288 * 180.25143 * 3 2 1 6 6 C 1.38284 * 120.12596 * 359.45029 * 5 3 2 7 7 C 1.38098 * 120.08187 * 0.54904 * 6 5 3 8 8 C 1.38819 * 120.03838 * 179.97438 * 2 1 3 9 9 N 1.39945 * 120.06687 * 0.04626 * 8 2 1 10 10 C 1.34775 * 119.99854 * 204.79625 * 9 8 2 11 11 O 1.21585 * 120.00227 * 5.61618 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.62259 * 10 9 8 13 13 C 1.46495 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47571 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99743 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00504 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99409 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47332 * 59.99967 * 18 16 14 20 20 H 1.48501 * 109.47247 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47207 * 300.00048 * 18 16 14 22 22 H 1.08995 * 109.47291 * 89.99601 * 1 2 3 23 23 H 1.08998 * 109.47174 * 210.00410 * 1 2 3 24 24 H 1.09006 * 109.47355 * 330.00133 * 1 2 3 25 25 H 1.08000 * 119.93676 * 179.72151 * 5 3 2 26 26 H 1.08005 * 119.95897 * 180.27189 * 6 5 3 27 27 H 1.08003 * 120.02324 * 179.70057 * 7 6 5 28 28 H 0.96996 * 119.99668 * 24.79169 * 9 8 2 29 29 H 0.97004 * 119.99760 * 359.97438 * 12 10 9 30 30 H 1.09003 * 109.46728 * 299.99934 * 13 12 10 31 31 H 1.09004 * 109.46958 * 59.99330 * 13 12 10 32 32 H 0.97002 * 119.99613 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3317 2.7005 -0.0007 5 6 3.5829 1.1968 -0.0053 6 6 4.2770 0.0008 0.0010 7 6 3.5909 -1.1977 0.0010 8 6 2.2019 -1.2017 0.0005 9 7 1.5044 -2.4150 0.0001 10 6 2.0868 -3.5273 0.4901 11 8 3.1765 -3.4578 1.0249 12 7 1.4613 -4.7167 0.3870 13 6 2.0940 -5.9257 0.9201 14 6 1.1951 -7.1109 0.6795 15 1 0.2473 -6.9771 0.1792 16 6 1.5829 -8.3664 1.0972 17 7 2.7376 -8.5295 1.7052 18 14 0.4689 -9.8357 0.7984 19 1 0.2428 -9.9970 -0.6605 20 1 1.1107 -11.0614 1.3377 21 1 -0.8323 -9.6170 1.4797 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 4.1218 2.1327 -0.0098 26 1 5.3570 0.0039 0.0013 27 1 4.1340 -2.1313 0.0009 28 1 0.6018 -2.4553 -0.3528 29 1 0.5918 -4.7721 -0.0394 30 1 3.0493 -6.0863 0.4202 31 1 2.2597 -5.8071 1.9909 32 1 3.0106 -9.4128 1.9987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242822063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:18 Heat of formation + Delta-G solvation = -16.818576 kcal Electronic energy + Delta-G solvation = -17395.766696 eV Core-core repulsion = 14381.950773 eV Total energy + Delta-G solvation = -3013.815923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.50168 -38.63845 -36.55134 -34.70729 -34.30453 -32.52846 -32.37314 -29.58198 -27.34018 -26.68955 -23.50101 -22.23148 -21.40991 -20.32920 -18.34489 -17.70613 -16.18078 -15.87238 -15.55917 -15.02331 -14.80817 -14.41147 -14.18664 -14.00117 -13.37574 -13.18044 -12.62117 -12.52376 -12.23849 -12.04944 -11.75348 -11.58117 -11.48522 -11.03890 -10.93183 -10.85892 -10.35885 -10.22838 -9.49017 -9.47304 -8.81244 -8.62520 -8.17238 -7.76701 -6.21884 -4.29344 1.21039 1.28032 2.02808 3.06678 3.22168 3.27657 3.29307 3.45278 3.89913 4.27091 4.67838 4.80402 4.85356 5.04562 5.14489 5.36659 5.46139 5.47699 5.57417 5.66370 5.98083 6.17769 6.28787 6.40941 6.56843 6.94087 7.05356 7.30578 7.42102 7.44994 7.73680 7.92141 8.59095 8.75122 9.07272 9.37485 10.88189 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.046201 B = 0.003513 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.896081 B = 7968.718931 C = 8486.831148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 C -0.015 4.015 4 Cl -0.076 7.076 5 C -0.139 4.139 6 C -0.091 4.091 7 C -0.125 4.125 8 C 0.197 3.803 9 N -0.689 5.689 10 C 0.690 3.310 11 O -0.578 6.578 12 N -0.719 5.719 13 C 0.265 3.735 14 C -0.546 4.546 15 H 0.063 0.937 16 C 0.065 3.935 17 N -0.884 5.884 18 Si 0.906 3.094 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.157 0.843 28 H 0.405 0.595 29 H 0.389 0.611 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 18.428 -5.313 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.128 4.128 3 C -0.042 4.042 4 Cl -0.047 7.047 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.146 4.146 8 C 0.099 3.901 9 N -0.335 5.335 10 C 0.390 3.610 11 O -0.456 6.456 12 N -0.370 5.370 13 C 0.145 3.855 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.733 3.267 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.200 1.200 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.175 0.825 28 H 0.240 0.760 29 H 0.222 0.778 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.385 18.278 -4.714 19.026 hybrid contribution -1.465 -0.757 -0.434 1.705 sum -3.850 17.521 -5.148 18.663 Atomic orbital electron populations 1.20762 0.90369 1.03558 1.02621 1.19286 0.96493 0.90259 1.06723 1.20385 0.92060 0.85769 1.05984 1.98338 1.77200 1.32151 1.96996 1.20915 0.91703 0.99123 1.04172 1.21001 1.00129 0.91115 0.98731 1.21699 0.92685 1.00381 0.99844 1.17238 0.91256 0.83797 0.97768 1.42876 1.18820 1.06698 1.65137 1.16157 0.84662 0.80467 0.79689 1.90850 1.20721 1.85039 1.49032 1.45819 1.22810 1.06662 1.61747 1.19080 0.93580 0.78213 0.94645 1.21157 1.04850 0.92073 1.40359 0.91904 1.24939 0.95353 0.99002 0.94627 1.69961 1.20252 1.23827 1.38096 0.86447 0.80403 0.81270 0.78627 1.20043 1.21024 1.20043 0.90885 0.91351 0.90598 0.85314 0.84958 0.82537 0.75987 0.77826 0.95370 0.95409 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.05 36.00 0.33 -0.84 16 2 C -0.12 -1.56 5.90 -104.40 -0.62 -2.18 16 3 C -0.01 -0.18 6.31 -39.53 -0.25 -0.43 16 4 Cl -0.08 -0.80 27.29 -51.86 -1.42 -2.21 16 5 C -0.14 -1.61 9.83 -39.51 -0.39 -2.00 16 6 C -0.09 -1.14 10.04 -39.62 -0.40 -1.53 16 7 C -0.13 -1.93 8.72 -39.39 -0.34 -2.28 16 8 C 0.20 2.92 6.41 -83.69 -0.54 2.38 16 9 N -0.69 -10.25 4.98 -14.23 -0.07 -10.32 16 10 C 0.69 13.50 8.37 -86.92 -0.73 12.78 16 11 O -0.58 -13.44 13.51 5.29 0.07 -13.37 16 12 N -0.72 -14.52 5.55 -66.42 -0.37 -14.89 16 13 C 0.27 6.82 5.43 -5.20 -0.03 6.79 16 14 C -0.55 -14.40 9.28 -34.44 -0.32 -14.71 16 15 H 0.06 1.54 7.60 -52.48 -0.40 1.14 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.88 -25.53 13.29 55.43 0.74 -24.80 16 18 Si 0.91 20.41 29.54 -169.99 -5.02 15.39 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.66 6.99 -51.93 -0.36 0.29 16 24 H 0.08 0.72 6.90 -51.93 -0.36 0.37 16 25 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 26 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 27 H 0.16 2.79 5.79 -52.48 -0.30 2.49 16 28 H 0.40 4.65 7.42 -40.82 -0.30 4.35 16 29 H 0.39 6.60 8.34 -40.82 -0.34 6.26 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -30.69 292.15 -8.36 -39.04 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -3.32 Total: 7.12 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -3.38 Total: -0.36 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: 0.30 Total: -50.01 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.21 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.69 -8.36 -39.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242822063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.226 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds