Wall clock time and date at job start Mon Mar 30 2020 00:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38247 * 120.04233 * 2 1 4 4 Cl 1.73602 * 119.97941 * 359.97438 * 3 2 1 5 5 C 1.38379 * 120.04288 * 180.25143 * 3 2 1 6 6 C 1.38284 * 120.12596 * 359.45029 * 5 3 2 7 7 C 1.38098 * 120.08187 * 0.54904 * 6 5 3 8 8 C 1.38819 * 120.03838 * 179.97438 * 2 1 3 9 9 N 1.39945 * 120.06687 * 0.04626 * 8 2 1 10 10 C 1.34775 * 119.99854 * 204.79625 * 9 8 2 11 11 O 1.21585 * 120.00227 * 5.61618 * 10 9 8 12 12 N 1.34778 * 119.99818 * 185.62259 * 10 9 8 13 13 C 1.46495 * 120.00361 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47571 * 179.97438 * 13 12 10 15 15 H 1.08008 * 119.99743 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00504 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99409 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00176 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47332 * 59.99967 * 18 16 14 20 20 H 1.48501 * 109.47247 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47207 * 300.00048 * 18 16 14 22 22 H 1.08995 * 109.47291 * 89.99601 * 1 2 3 23 23 H 1.08998 * 109.47174 * 210.00410 * 1 2 3 24 24 H 1.09006 * 109.47355 * 330.00133 * 1 2 3 25 25 H 1.08000 * 119.93676 * 179.72151 * 5 3 2 26 26 H 1.08005 * 119.95897 * 180.27189 * 6 5 3 27 27 H 1.08003 * 120.02324 * 179.70057 * 7 6 5 28 28 H 0.96996 * 119.99668 * 24.79169 * 9 8 2 29 29 H 0.97004 * 119.99760 * 359.97438 * 12 10 9 30 30 H 1.09003 * 109.46728 * 299.99934 * 13 12 10 31 31 H 1.09004 * 109.46958 * 59.99330 * 13 12 10 32 32 H 0.97002 * 119.99613 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1967 0.0000 4 17 1.3317 2.7005 -0.0007 5 6 3.5829 1.1968 -0.0053 6 6 4.2770 0.0008 0.0010 7 6 3.5909 -1.1977 0.0010 8 6 2.2019 -1.2017 0.0005 9 7 1.5044 -2.4150 0.0001 10 6 2.0868 -3.5273 0.4901 11 8 3.1765 -3.4578 1.0249 12 7 1.4613 -4.7167 0.3870 13 6 2.0940 -5.9257 0.9201 14 6 1.1951 -7.1109 0.6795 15 1 0.2473 -6.9771 0.1792 16 6 1.5829 -8.3664 1.0972 17 7 2.7376 -8.5295 1.7052 18 14 0.4689 -9.8357 0.7984 19 1 0.2428 -9.9970 -0.6605 20 1 1.1107 -11.0614 1.3377 21 1 -0.8323 -9.6170 1.4797 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 4.1218 2.1327 -0.0098 26 1 5.3570 0.0039 0.0013 27 1 4.1340 -2.1313 0.0009 28 1 0.6018 -2.4553 -0.3528 29 1 0.5918 -4.7721 -0.0394 30 1 3.0493 -6.0863 0.4202 31 1 2.2597 -5.8071 1.9909 32 1 3.0106 -9.4128 1.9987 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000242822063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:17 Heat of formation + Delta-G solvation = -36.867465 kcal Electronic energy + Delta-G solvation = -17396.636081 eV Core-core repulsion = 14381.950773 eV Total energy + Delta-G solvation = -3014.685308 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82420 -39.92363 -37.51263 -36.28475 -35.85337 -34.37742 -33.48268 -30.82699 -29.04930 -27.78115 -25.15309 -23.71926 -22.48628 -21.85551 -19.90989 -18.92933 -18.03546 -17.10390 -16.87359 -16.63851 -16.26207 -15.74667 -15.46987 -15.16925 -14.86047 -14.34684 -14.09621 -14.04438 -13.51376 -13.34093 -12.95146 -12.85606 -12.70056 -12.58581 -12.46234 -12.22254 -11.75336 -11.50847 -11.48312 -11.06824 -10.79614 -9.95392 -9.61673 -9.01403 -8.28763 -6.45208 0.17959 0.22574 1.06248 1.44385 1.48409 1.56158 1.70519 2.02866 2.39172 2.71290 3.06700 3.32794 3.78131 3.93430 4.05498 4.36066 4.41733 4.61786 4.71352 4.73993 5.02483 5.15450 5.22021 5.24154 5.25067 5.34605 5.40244 5.50317 5.63211 5.81933 5.91202 6.12371 6.65135 7.10304 7.24634 7.53101 8.83148 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.046201 B = 0.003513 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.896081 B = 7968.718931 C = 8486.831148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 C -0.023 4.023 4 Cl -0.056 7.056 5 C -0.129 4.129 6 C -0.091 4.091 7 C -0.151 4.151 8 C 0.170 3.830 9 N -0.668 5.668 10 C 0.691 3.309 11 O -0.620 6.620 12 N -0.713 5.713 13 C 0.285 3.715 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.153 0.847 27 H 0.124 0.876 28 H 0.422 0.578 29 H 0.407 0.593 30 H -0.009 1.009 31 H -0.010 1.010 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.509 19.831 -6.303 21.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.120 4.120 3 C -0.050 4.050 4 Cl -0.027 7.027 5 C -0.148 4.148 6 C -0.110 4.110 7 C -0.172 4.172 8 C 0.074 3.926 9 N -0.316 5.316 10 C 0.392 3.608 11 O -0.500 6.500 12 N -0.366 5.366 13 C 0.162 3.838 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.187 1.187 22 H 0.111 0.889 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.174 0.826 26 H 0.171 0.829 27 H 0.142 0.858 28 H 0.261 0.739 29 H 0.243 0.757 30 H 0.009 0.991 31 H 0.008 0.992 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.541 19.754 -5.745 21.068 hybrid contribution -0.763 -0.989 -0.134 1.256 sum -5.304 18.765 -5.879 20.367 Atomic orbital electron populations 1.20861 0.88370 1.04111 1.04059 1.19505 0.97925 0.89464 1.05141 1.20578 0.92563 0.86448 1.05442 1.98348 1.76808 1.30692 1.96859 1.21238 0.91771 0.99697 1.02132 1.21207 1.01257 0.90459 0.98054 1.21596 0.93362 1.00275 1.01918 1.17392 0.91240 0.84144 0.99865 1.42457 1.19354 1.05499 1.64284 1.16229 0.84080 0.81168 0.79336 1.90835 1.22660 1.85807 1.50738 1.45354 1.23480 1.05658 1.62129 1.18489 0.92711 0.80558 0.92085 1.21564 1.05531 0.92211 1.40188 0.89706 1.26032 0.96819 1.02532 0.94043 1.70127 1.22537 1.24693 1.39440 0.85208 0.78288 0.76637 0.79088 1.18686 1.21199 1.18674 0.88901 0.90997 0.89855 0.82555 0.82935 0.85801 0.73867 0.75676 0.99089 0.99221 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.05 71.24 0.64 -1.39 16 2 C -0.12 -2.74 5.90 -19.72 -0.12 -2.85 16 3 C -0.02 -0.50 6.31 22.31 0.14 -0.36 16 4 Cl -0.06 -1.01 27.29 -2.72 -0.07 -1.09 16 5 C -0.13 -2.69 9.83 22.31 0.22 -2.47 16 6 C -0.09 -2.21 10.04 22.25 0.22 -1.99 16 7 C -0.15 -4.76 8.72 22.40 0.20 -4.57 16 8 C 0.17 4.99 6.41 38.14 0.24 5.23 16 9 N -0.67 -19.76 4.98 -317.19 -1.58 -21.34 16 10 C 0.69 27.94 8.37 179.05 1.50 29.44 16 11 O -0.62 -30.50 13.51 -3.98 -0.05 -30.55 16 12 N -0.71 -29.44 5.55 -482.31 -2.68 -32.11 16 13 C 0.28 15.28 5.43 85.63 0.46 15.74 16 14 C -0.56 -29.56 9.28 25.60 0.24 -29.33 16 15 H 0.08 4.03 7.60 -2.91 -0.02 4.00 16 16 C 0.01 0.31 5.46 84.66 0.46 0.77 16 17 N -0.93 -55.23 13.29 21.45 0.28 -54.94 16 18 Si 0.98 41.47 29.54 68.60 2.03 43.50 16 19 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 20 H -0.29 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.20 6.99 -2.39 -0.02 1.19 16 24 H 0.08 1.34 6.90 -2.38 -0.02 1.32 16 25 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 26 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 27 H 0.12 4.76 5.79 -2.91 -0.02 4.74 16 28 H 0.42 9.14 7.42 -92.71 -0.69 8.45 16 29 H 0.41 13.57 8.34 -92.71 -0.77 12.80 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -68.94 292.15 1.85 -67.09 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.29 Total: 21.22 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 4.21 Total: 8.22 kcal Atomic # 7 Polarization: -104.42 SS G_CDS: -3.97 Total: -108.40 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.05 Total: -30.55 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.07 Total: -1.09 kcal Total: -68.94 1.85 -67.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242822063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.226 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds