Wall clock time and date at job start Mon Mar 30 2020 00:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 N 1.40105 * 119.99775 * 180.27576 * 13 11 10 15 15 C 1.39748 * 119.99402 * 179.72199 * 14 13 11 16 16 C 1.38872 * 120.08405 * 359.97438 * 15 14 13 17 17 C 1.38114 * 119.94230 * 179.97438 * 16 15 14 18 18 C 1.38292 * 120.09531 * 0.02562 * 17 16 15 19 19 C 1.38278 * 120.15174 * 0.02562 * 18 17 16 20 20 C 1.38210 * 120.06390 * 359.69439 * 19 18 17 21 21 Cl 1.73599 * 120.04934 * 180.28165 * 20 19 18 22 22 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 24 24 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 25 25 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 26 26 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 0.97000 * 119.99844 * 359.72383 * 14 13 11 29 29 H 1.08010 * 120.03091 * 359.96279 * 16 15 14 30 30 H 1.07999 * 119.95522 * 180.02562 * 17 16 15 31 31 H 1.07990 * 119.92685 * 179.97438 * 18 17 16 32 32 H 1.08006 * 119.96618 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 7 1.4654 -7.3477 -0.0072 15 6 2.1642 -8.5579 -0.0126 16 6 3.5530 -8.5597 -0.0122 17 6 4.2407 -9.7575 -0.0171 18 6 3.5484 -10.9546 -0.0229 19 6 2.1656 -10.9573 -0.0244 20 6 1.4709 -9.7625 -0.0137 21 17 -0.2651 -9.7664 -0.0082 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8898 25 1 2.8721 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 3.1359 -6.1343 -0.0004 28 1 0.4954 -7.3477 -0.0079 29 1 4.0948 -7.6254 -0.0083 30 1 5.3207 -9.7592 -0.0163 31 1 4.0889 -11.8895 -0.0271 32 1 1.6280 -11.8940 -0.0293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291994792.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:47 Heat of formation + Delta-G solvation = 8.048262 kcal Electronic energy + Delta-G solvation = -17011.064313 eV Core-core repulsion = 13998.326696 eV Total energy + Delta-G solvation = -3012.737616 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08511 -38.99215 -36.57913 -35.90245 -33.56613 -32.24758 -30.97816 -30.89890 -28.27612 -25.64663 -23.33436 -22.43755 -21.58445 -20.14483 -18.31294 -17.50400 -16.69011 -16.38076 -15.55696 -15.25351 -15.01036 -14.48281 -14.34122 -14.12828 -13.94120 -13.46188 -12.77696 -12.27633 -12.18782 -11.90515 -11.60136 -11.46157 -11.27778 -11.05057 -10.95621 -10.67918 -10.06735 -9.81547 -9.44801 -9.43598 -9.18067 -9.05826 -8.37850 -7.34372 -6.01591 -4.06920 0.97083 1.21761 1.90124 2.09911 2.99095 3.31424 3.36496 3.37842 3.48713 4.19305 4.43092 4.46073 4.73593 5.07074 5.11402 5.18631 5.33518 5.35697 5.57041 5.81337 6.01415 6.05137 6.05232 6.25346 6.44172 6.64777 6.88439 7.37693 7.67051 7.71339 7.75477 7.99076 8.29864 8.59181 9.00646 9.57104 11.09264 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.003356 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.695034 B = 8341.696560 C = 9053.933647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.118 4.118 11 C 0.509 3.491 12 O -0.530 6.530 13 N -0.538 5.538 14 N -0.536 5.536 15 C 0.235 3.765 16 C -0.196 4.196 17 C -0.058 4.058 18 C -0.176 4.176 19 C -0.054 4.054 20 C -0.117 4.117 21 Cl -0.070 7.070 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.419 0.581 28 H 0.436 0.564 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 -22.126 -0.039 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.402 6.402 13 N -0.288 5.288 14 N -0.259 5.259 15 C 0.128 3.872 16 C -0.220 4.220 17 C -0.077 4.077 18 C -0.197 4.197 19 C -0.074 4.074 20 C -0.149 4.149 21 Cl -0.041 7.041 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.260 0.740 28 H 0.281 0.719 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.437 -21.742 -0.035 22.978 hybrid contribution 0.372 0.869 -0.004 0.945 sum 7.809 -20.873 -0.039 22.286 Atomic orbital electron populations 1.69985 1.06088 1.26859 1.49776 1.25024 0.94844 0.99301 0.95154 0.86618 0.79523 0.83013 0.78582 1.20198 1.21260 1.20195 1.21136 0.92939 0.90808 1.51975 0.92488 1.18934 0.93110 0.89062 0.98913 1.21893 1.00899 0.89945 1.03165 1.22087 0.89214 0.83909 0.74982 1.90707 1.14212 1.86811 1.48516 1.45525 1.08114 0.96340 1.78809 1.43637 1.07167 0.94348 1.80771 1.17486 0.91583 0.83463 0.94717 1.20446 0.90852 0.99373 1.11295 1.20968 0.99974 0.91571 0.95157 1.20852 0.93188 0.98359 1.07271 1.20808 0.94265 0.95825 0.96474 1.20201 0.84486 0.93226 1.17031 1.98366 1.09746 1.98539 1.97447 0.92788 0.95595 0.95606 0.89541 0.89551 0.73998 0.71929 0.85508 0.85336 0.85431 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 10 C -0.12 -2.23 5.64 -27.89 -0.16 -2.39 16 11 C 0.51 9.47 7.95 -10.98 -0.09 9.38 16 12 O -0.53 -12.19 15.82 5.55 0.09 -12.10 16 13 N -0.54 -7.67 6.22 31.22 0.19 -7.47 16 14 N -0.54 -7.64 6.41 32.44 0.21 -7.43 16 15 C 0.24 2.84 6.72 -83.73 -0.56 2.28 16 16 C -0.20 -1.93 9.48 -39.39 -0.37 -2.31 16 17 C -0.06 -0.47 10.04 -39.61 -0.40 -0.87 16 18 C -0.18 -1.39 10.04 -39.55 -0.40 -1.79 16 19 C -0.05 -0.50 9.82 -39.58 -0.39 -0.88 16 20 C -0.12 -1.32 6.34 -39.31 -0.25 -1.57 16 21 Cl -0.07 -0.82 27.60 -51.86 -1.43 -2.25 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.73 8.10 -51.92 -0.42 0.31 16 25 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 26 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.42 4.47 6.61 -182.59 -1.21 3.27 16 28 H 0.44 6.82 6.68 -182.59 -1.22 5.60 16 29 H 0.13 1.04 6.21 -52.48 -0.33 0.71 16 30 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -33.10 297.23 -9.14 -42.23 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.25 Total: 3.19 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -3.14 Total: -10.64 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 1.14 Total: -41.17 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.43 Total: -2.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.10 -9.14 -42.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291994792.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.280 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds