Wall clock time and date at job start Mon Mar 30 2020 01:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.93969 * 2 1 4 4 C 1.51135 * 109.95089 * 238.80028 * 2 1 3 5 5 C 1.34051 * 127.71850 * 49.93139 * 4 2 1 6 6 C 1.41088 * 107.34218 * 179.76696 * 5 4 2 7 7 C 1.35092 * 107.46935 * 0.15951 * 6 5 4 8 8 Cl 1.73597 * 125.87322 * 180.15503 * 7 6 5 9 9 N 1.36086 * 108.24832 * 0.13825 * 7 6 5 10 10 C 1.46715 * 126.94105 * 179.52971 * 9 7 6 11 11 C 1.53227 * 109.22374 * 161.41864 * 10 9 7 12 12 N 1.47054 * 109.29700 * 46.31151 * 11 10 9 13 13 C 1.34771 * 120.98023 * 115.84610 * 12 11 10 14 14 O 1.21690 * 119.99966 * 184.89594 * 13 12 11 15 15 C 1.46378 * 120.00136 * 4.90426 * 13 12 11 16 16 H 1.07998 * 119.99742 * 346.99280 * 15 13 12 17 17 C 1.40043 * 119.99896 * 166.99733 * 15 13 12 18 18 N 1.30682 * 119.99642 * 169.38203 * 17 15 13 19 19 Si 1.86803 * 120.00407 * 349.38173 * 17 15 13 20 20 H 1.48505 * 109.46850 * 84.85932 * 19 17 15 21 21 H 1.48498 * 109.47257 * 204.85790 * 19 17 15 22 22 H 1.48491 * 109.46875 * 324.86161 * 19 17 15 23 23 H 1.09008 * 109.46741 * 308.46983 * 1 2 3 24 24 H 1.08997 * 109.47296 * 188.46982 * 1 2 3 25 25 H 1.08993 * 109.47384 * 68.46377 * 1 2 3 26 26 H 1.07997 * 126.30868 * 359.78871 * 5 4 2 27 27 H 1.08000 * 126.26579 * 180.13236 * 6 5 4 28 28 H 1.08999 * 109.51349 * 41.49301 * 10 9 7 29 29 H 1.08994 * 109.55450 * 281.36573 * 10 9 7 30 30 H 1.09006 * 109.49955 * 286.36351 * 11 10 9 31 31 H 1.09001 * 109.52886 * 166.27750 * 11 10 9 32 32 H 0.96997 * 119.99550 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9018 1.0246 0.0000 4 6 2.0458 -0.7359 -1.2152 5 6 1.6840 -0.5618 -2.4941 6 6 2.4364 -1.4677 -3.2711 7 6 3.2291 -2.1643 -2.4277 8 17 4.3555 -3.4049 -2.8814 9 7 2.9929 -1.7260 -1.1612 10 6 3.6246 -2.2098 0.0715 11 6 3.4332 -1.1681 1.1789 12 7 2.0333 -0.7180 1.1859 13 6 1.2339 -0.9541 2.2450 14 8 0.0557 -0.6535 2.1970 15 6 1.7830 -1.5720 3.4530 16 1 2.7616 -2.0283 3.4291 17 6 1.0393 -1.5716 4.6397 18 7 1.4290 -2.2958 5.6552 19 14 -0.5096 -0.5357 4.7710 20 1 -1.6598 -1.2924 4.2143 21 1 -0.7715 -0.2153 6.1971 22 1 -0.3290 0.7240 4.0057 23 1 -0.3633 0.6394 0.8047 24 1 -0.3634 -1.0164 0.1514 25 1 -0.3634 0.3772 -0.9558 26 1 0.9520 0.1422 -2.8615 27 1 2.3874 -1.5834 -4.3438 28 1 4.6894 -2.3654 -0.1018 29 1 3.1635 -3.1503 0.3728 30 1 4.0883 -0.3166 0.9946 31 1 3.6772 -1.6129 2.1436 32 1 0.9141 -2.2952 6.4772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848088607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:32 Heat of formation + Delta-G solvation = 17.026851 kcal Electronic energy + Delta-G solvation = -18701.645478 eV Core-core repulsion = 15689.297203 eV Total energy + Delta-G solvation = -3012.348275 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.40283 -38.46422 -36.58084 -35.17990 -33.60776 -32.80746 -30.82141 -28.14302 -27.42207 -26.40872 -23.31002 -22.74700 -20.55081 -19.82455 -18.27618 -17.48232 -16.62651 -15.73634 -15.42314 -15.22436 -14.52310 -14.24049 -13.83002 -13.47715 -12.79807 -12.64092 -12.51040 -12.35088 -12.19139 -11.97684 -11.63609 -11.52508 -11.33046 -11.15438 -11.03864 -10.91202 -10.75596 -10.47276 -9.58352 -9.10834 -8.55375 -7.90243 -7.80236 -7.57396 -6.74220 -4.98196 1.86416 2.21579 3.04026 3.08010 3.37044 3.43006 3.63784 3.94736 4.06792 4.44286 4.81150 4.89476 5.15897 5.27930 5.41578 5.52179 5.61209 5.75965 5.77556 5.92507 6.08794 6.19788 6.24657 6.32602 6.70415 6.77684 6.94214 7.08010 7.19485 7.30212 7.45412 7.71450 8.13091 8.55981 8.96683 9.88276 10.25879 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.006103 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.285470 B = 4586.632243 C = 5262.698982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.216 3.784 3 H 0.075 0.925 4 C 0.041 3.959 5 C -0.190 4.190 6 C -0.174 4.174 7 C 0.053 3.947 8 Cl -0.036 7.036 9 N -0.432 5.432 10 C 0.084 3.916 11 C 0.110 3.890 12 N -0.635 5.635 13 C 0.557 3.443 14 O -0.602 6.602 15 C -0.535 4.535 16 H 0.089 0.911 17 C 0.103 3.897 18 N -0.824 5.824 19 Si 0.968 3.032 20 H -0.277 1.277 21 H -0.322 1.322 22 H -0.265 1.265 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.122 0.878 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 1.569 -12.577 13.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.112 3.888 3 H 0.093 0.907 4 C -0.072 4.072 5 C -0.214 4.214 6 C -0.201 4.201 7 C -0.084 4.084 8 Cl -0.008 7.008 9 N -0.111 5.111 10 C -0.039 4.039 11 C -0.015 4.015 12 N -0.370 5.370 13 C 0.368 3.632 14 O -0.493 6.493 15 C -0.571 4.571 16 H 0.107 0.893 17 C -0.115 4.115 18 N -0.453 5.453 19 Si 0.800 3.200 20 H -0.203 1.203 21 H -0.253 1.253 22 H -0.190 1.190 23 H 0.104 0.896 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.950 1.352 -12.126 13.168 hybrid contribution -0.132 -0.078 -0.036 0.157 sum 4.818 1.274 -12.162 13.144 Atomic orbital electron populations 1.22047 0.91280 1.04507 1.00109 1.19829 0.96003 0.93127 0.79860 0.90742 1.21028 0.94765 0.94337 0.97048 1.20306 1.05214 1.04614 0.91246 1.20612 1.00423 1.00321 0.98716 1.20715 1.02301 0.99713 0.85638 1.98343 1.60054 1.51622 1.90789 1.44180 1.32410 1.29388 1.05104 1.22552 0.98262 1.00007 0.83036 1.21762 0.84544 0.96018 0.99190 1.47968 1.10849 1.60893 1.17317 1.18251 0.84577 0.77947 0.82464 1.90256 1.17136 1.61120 1.80836 1.20750 1.05544 1.37874 0.92889 0.89305 1.25767 0.98780 0.92864 0.94136 1.69558 1.38994 1.32558 1.04157 0.85191 0.80522 0.81625 0.72635 1.20292 1.25326 1.19044 0.89565 0.91593 0.94504 0.83911 0.84021 0.89160 0.89516 0.91925 0.85996 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 7.59 37.16 0.28 -2.01 16 2 C 0.22 3.93 3.82 -68.33 -0.26 3.67 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.04 0.70 6.16 -81.49 -0.50 0.20 16 5 C -0.19 -2.85 10.24 -39.97 -0.41 -3.26 16 6 C -0.17 -2.51 10.84 -39.62 -0.43 -2.94 16 7 C 0.05 0.81 7.44 -16.78 -0.12 0.68 16 8 Cl -0.04 -0.47 29.07 -51.86 -1.51 -1.97 16 9 N -0.43 -7.05 3.16 -108.68 -0.34 -7.39 16 10 C 0.08 1.27 6.92 -3.81 -0.03 1.24 16 11 C 0.11 1.84 6.31 -3.62 -0.02 1.82 16 12 N -0.64 -13.01 2.96 -167.50 -0.50 -13.50 16 13 C 0.56 13.84 7.17 -12.99 -0.09 13.75 16 14 O -0.60 -15.98 8.33 5.20 0.04 -15.94 16 15 C -0.54 -14.11 9.37 -35.63 -0.33 -14.45 16 16 H 0.09 2.29 5.97 -52.49 -0.31 1.98 16 17 C 0.10 2.80 5.52 -17.36 -0.10 2.71 16 18 N -0.82 -22.41 13.92 55.55 0.77 -21.64 16 19 Si 0.97 24.37 25.83 -169.99 -4.39 19.98 16 20 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.32 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.27 -6.90 6.73 56.52 0.38 -6.52 16 23 H 0.09 1.79 6.55 -51.92 -0.34 1.45 16 24 H 0.07 1.42 7.19 -51.93 -0.37 1.04 16 25 H 0.04 0.57 7.59 -51.93 -0.39 0.18 16 26 H 0.14 1.84 7.88 -52.49 -0.41 1.43 16 27 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.13 5.36 -51.93 -0.28 1.85 16 32 H 0.28 7.13 8.29 -40.82 -0.34 6.79 16 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -29.44 275.04 -7.17 -36.61 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -3.38 Total: -1.69 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.02 Total: 1.40 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: -0.07 Total: -42.53 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.04 Total: -15.94 kcal Atomic # 14 Polarization: 24.37 SS G_CDS: -4.39 Total: 19.98 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.44 -7.17 -36.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848088607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.640 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds