Wall clock time and date at job start Mon Mar 30 2020 01:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08990 * 109.93969 * 2 1 4 4 C 1.51135 * 109.95089 * 238.80028 * 2 1 3 5 5 C 1.34051 * 127.71850 * 49.93139 * 4 2 1 6 6 C 1.41088 * 107.34218 * 179.76696 * 5 4 2 7 7 C 1.35092 * 107.46935 * 0.15951 * 6 5 4 8 8 Cl 1.73597 * 125.87322 * 180.15503 * 7 6 5 9 9 N 1.36086 * 108.24832 * 0.13825 * 7 6 5 10 10 C 1.46715 * 126.94105 * 179.52971 * 9 7 6 11 11 C 1.53227 * 109.22374 * 161.41864 * 10 9 7 12 12 N 1.47054 * 109.29700 * 46.31151 * 11 10 9 13 13 C 1.34771 * 120.98023 * 115.84610 * 12 11 10 14 14 O 1.21690 * 119.99966 * 184.89594 * 13 12 11 15 15 C 1.46378 * 120.00136 * 4.90426 * 13 12 11 16 16 H 1.07998 * 119.99742 * 346.99280 * 15 13 12 17 17 C 1.40043 * 119.99896 * 166.99733 * 15 13 12 18 18 N 1.30682 * 119.99642 * 169.38203 * 17 15 13 19 19 Si 1.86803 * 120.00407 * 349.38173 * 17 15 13 20 20 H 1.48505 * 109.46850 * 84.85932 * 19 17 15 21 21 H 1.48498 * 109.47257 * 204.85790 * 19 17 15 22 22 H 1.48491 * 109.46875 * 324.86161 * 19 17 15 23 23 H 1.09008 * 109.46741 * 308.46983 * 1 2 3 24 24 H 1.08997 * 109.47296 * 188.46982 * 1 2 3 25 25 H 1.08993 * 109.47384 * 68.46377 * 1 2 3 26 26 H 1.07997 * 126.30868 * 359.78871 * 5 4 2 27 27 H 1.08000 * 126.26579 * 180.13236 * 6 5 4 28 28 H 1.08999 * 109.51349 * 41.49301 * 10 9 7 29 29 H 1.08994 * 109.55450 * 281.36573 * 10 9 7 30 30 H 1.09006 * 109.49955 * 286.36351 * 11 10 9 31 31 H 1.09001 * 109.52886 * 166.27750 * 11 10 9 32 32 H 0.96997 * 119.99550 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9018 1.0246 0.0000 4 6 2.0458 -0.7359 -1.2152 5 6 1.6840 -0.5618 -2.4941 6 6 2.4364 -1.4677 -3.2711 7 6 3.2291 -2.1643 -2.4277 8 17 4.3555 -3.4049 -2.8814 9 7 2.9929 -1.7260 -1.1612 10 6 3.6246 -2.2098 0.0715 11 6 3.4332 -1.1681 1.1789 12 7 2.0333 -0.7180 1.1859 13 6 1.2339 -0.9541 2.2450 14 8 0.0557 -0.6535 2.1970 15 6 1.7830 -1.5720 3.4530 16 1 2.7616 -2.0283 3.4291 17 6 1.0393 -1.5716 4.6397 18 7 1.4290 -2.2958 5.6552 19 14 -0.5096 -0.5357 4.7710 20 1 -1.6598 -1.2924 4.2143 21 1 -0.7715 -0.2153 6.1971 22 1 -0.3290 0.7240 4.0057 23 1 -0.3633 0.6394 0.8047 24 1 -0.3634 -1.0164 0.1514 25 1 -0.3634 0.3772 -0.9558 26 1 0.9520 0.1422 -2.8615 27 1 2.3874 -1.5834 -4.3438 28 1 4.6894 -2.3654 -0.1018 29 1 3.1635 -3.1503 0.3728 30 1 4.0883 -0.3166 0.9946 31 1 3.6772 -1.6129 2.1436 32 1 0.9141 -2.2952 6.4772 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848088607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:32 Heat of formation + Delta-G solvation = -0.539728 kcal Electronic energy + Delta-G solvation = -18702.407222 eV Core-core repulsion = 15689.297203 eV Total energy + Delta-G solvation = -3013.110019 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.072 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.63031 -40.19344 -37.67571 -36.76347 -35.25545 -34.57769 -32.27855 -29.46501 -28.86851 -28.20527 -24.80962 -24.10990 -21.85301 -21.34818 -19.76709 -18.90733 -18.33328 -17.48448 -16.87599 -16.78451 -16.05823 -15.87885 -15.13486 -14.69628 -14.49106 -14.23897 -14.15062 -13.80145 -13.61441 -13.41128 -13.22658 -13.02815 -12.81265 -12.65905 -12.61581 -12.39015 -12.14343 -12.07030 -11.51940 -11.20068 -9.73844 -9.57993 -9.47674 -8.94990 -8.80827 -7.03425 0.75120 1.02844 1.32850 1.39152 1.59800 1.87266 1.89650 2.07590 2.30438 2.56181 3.25547 3.57142 3.61885 3.99152 4.03935 4.22056 4.31919 4.45749 4.55896 4.62094 4.74864 4.85665 4.98561 5.03275 5.18439 5.22537 5.46421 5.60094 5.78670 5.94123 6.04592 6.08024 6.19056 6.59027 7.05873 7.95037 8.23713 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.031163 B = 0.006103 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.285470 B = 4586.632243 C = 5262.698982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.215 3.785 3 H 0.091 0.909 4 C 0.015 3.985 5 C -0.181 4.181 6 C -0.175 4.175 7 C 0.045 3.955 8 Cl -0.019 7.019 9 N -0.443 5.443 10 C 0.089 3.911 11 C 0.108 3.892 12 N -0.637 5.637 13 C 0.556 3.444 14 O -0.624 6.624 15 C -0.552 4.552 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.847 5.847 19 Si 1.010 2.990 20 H -0.294 1.294 21 H -0.304 1.304 22 H -0.281 1.281 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.111 0.889 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 1.997 -14.539 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 H 0.109 0.891 4 C -0.098 4.098 5 C -0.205 4.205 6 C -0.201 4.201 7 C -0.091 4.091 8 Cl 0.010 6.990 9 N -0.122 5.122 10 C -0.032 4.032 11 C -0.016 4.016 12 N -0.371 5.371 13 C 0.364 3.636 14 O -0.517 6.517 15 C -0.588 4.588 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.477 5.477 19 Si 0.843 3.157 20 H -0.222 1.222 21 H -0.234 1.234 22 H -0.208 1.208 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.182 0.818 27 H 0.185 0.815 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.763 1.781 -14.096 15.333 hybrid contribution -0.320 -0.234 0.436 0.589 sum 5.443 1.547 -13.660 14.786 Atomic orbital electron populations 1.21845 0.92043 1.01937 1.01044 1.19923 0.95473 0.93958 0.79537 0.89116 1.20885 0.96269 0.95624 0.97002 1.20644 1.04883 1.04480 0.90513 1.20977 0.99667 0.99593 0.99909 1.21030 1.02719 1.00099 0.85299 1.98351 1.59353 1.50796 1.90547 1.44266 1.32667 1.29603 1.05633 1.22478 0.99869 0.98508 0.82394 1.21898 0.82809 0.97364 0.99522 1.47886 1.11893 1.60307 1.17005 1.18157 0.84555 0.77556 0.83293 1.90251 1.18153 1.61639 1.81653 1.21001 1.05716 1.38418 0.93681 0.89456 1.26217 1.00168 0.93518 0.94435 1.69565 1.39978 1.33447 1.04745 0.84588 0.78327 0.79774 0.73005 1.22168 1.23430 1.20751 0.92035 0.94870 0.90947 0.81807 0.81550 0.86163 0.90887 0.89560 0.87098 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.11 7.59 71.98 0.55 -3.56 16 2 C 0.21 7.51 3.82 44.20 0.17 7.68 16 3 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 4 C 0.01 0.46 6.16 40.92 0.25 0.71 16 5 C -0.18 -4.86 10.24 22.01 0.23 -4.64 16 6 C -0.18 -4.44 10.84 22.24 0.24 -4.20 16 7 C 0.05 1.24 7.44 83.31 0.62 1.86 16 8 Cl -0.02 -0.43 29.07 -2.72 -0.08 -0.51 16 9 N -0.44 -13.43 3.16 -497.74 -1.57 -15.00 16 10 C 0.09 2.56 6.92 86.41 0.60 3.16 16 11 C 0.11 3.49 6.31 86.35 0.54 4.03 16 12 N -0.64 -25.77 2.96 -802.08 -2.38 -28.14 16 13 C 0.56 27.90 7.17 86.36 0.62 28.52 16 14 O -0.62 -33.67 8.33 -4.32 -0.04 -33.70 16 15 C -0.55 -29.51 9.37 24.83 0.23 -29.28 16 16 H 0.09 4.58 5.97 -2.91 -0.02 4.56 16 17 C 0.07 3.99 5.52 85.30 0.47 4.46 16 18 N -0.85 -46.35 13.92 21.84 0.30 -46.05 16 19 Si 1.01 50.81 25.83 68.60 1.77 52.58 16 20 H -0.29 -15.50 7.11 99.48 0.71 -14.79 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 22 H -0.28 -14.73 6.73 99.48 0.67 -14.06 16 23 H 0.06 2.56 6.55 -2.38 -0.02 2.55 16 24 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 25 H 0.07 2.11 7.59 -2.39 -0.02 2.09 16 26 H 0.16 3.59 7.88 -2.91 -0.02 3.56 16 27 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 30 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.11 3.85 5.36 -2.39 -0.01 3.83 16 32 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16 Total: -1.00 -62.71 275.04 3.64 -59.07 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: 1.11 Total: 3.02 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 4.52 Total: 8.73 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.65 Total: -89.19 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.04 Total: -33.70 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.77 Total: 52.58 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -62.71 3.64 -59.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848088607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.534 kcal (2) G-P(sol) polarization free energy of solvation -62.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds