Wall clock time and date at job start Mon Mar 30 2020 00:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99941 * 2 1 4 4 H 1.48491 * 109.47207 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46946 * 300.00250 * 3 2 1 6 6 H 1.48498 * 109.47013 * 60.00142 * 3 2 1 7 7 C 1.38813 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99910 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00311 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.84526 * 336.19205 * 10 9 7 12 12 C 1.54050 * 113.69576 * 107.46288 * 10 9 7 13 13 C 1.53783 * 86.98283 * 139.99477 * 12 10 9 14 14 H 1.09000 * 113.61554 * 219.97995 * 13 12 10 15 15 N 1.46498 * 113.61758 * 89.15928 * 13 12 10 16 16 C 1.34777 * 119.99828 * 105.58441 * 15 13 12 17 17 O 1.21623 * 119.99969 * 0.28063 * 16 15 13 18 18 C 1.47175 * 120.00199 * 180.27666 * 16 15 13 19 19 C 1.38243 * 128.47674 * 179.70008 * 18 16 15 20 20 N 1.31241 * 111.88662 * 179.84995 * 19 18 16 21 21 N 1.27334 * 120.03751 * 0.49365 * 20 19 18 22 22 S 1.56633 * 109.74138 * 359.71448 * 21 20 19 23 23 C 1.53775 * 113.61791 * 205.00012 * 10 9 7 24 24 H 0.97000 * 120.00252 * 359.97438 * 1 2 3 25 25 H 0.97003 * 120.00412 * 0.02562 * 9 7 2 26 26 H 1.08997 * 113.61361 * 25.49094 * 12 10 9 27 27 H 1.09001 * 113.69604 * 254.50676 * 12 10 9 28 28 H 0.97001 * 120.00384 * 285.86888 * 15 13 12 29 29 H 1.08003 * 124.05393 * 0.02562 * 19 18 16 30 30 H 1.09000 * 113.62018 * 105.38052 * 23 10 9 31 31 H 1.09007 * 113.61161 * 334.48157 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 3.0657 -3.5638 -0.4060 12 6 2.0011 -4.4046 1.3451 13 6 1.8499 -5.6981 0.5272 14 1 1.1366 -6.4035 0.9535 15 7 3.1274 -6.3232 0.1761 16 6 3.5307 -7.4382 0.8170 17 8 2.8316 -7.9282 1.6832 18 6 4.8170 -8.0628 0.4685 19 6 5.3991 -9.1932 1.0110 20 7 6.5557 -9.4638 0.4527 21 7 7.0117 -8.7097 -0.4664 22 16 6.0024 -7.5446 -0.7443 23 6 1.2603 -4.8288 -0.5960 24 1 -0.4850 0.8400 0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 1.1229 -4.1610 1.9431 27 1 2.9293 -4.3539 1.9141 28 1 3.6850 -5.9324 -0.5148 29 1 4.9542 -9.7845 1.7977 30 1 1.5907 -5.1203 -1.5929 31 1 0.1799 -4.7008 -0.5277 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020005230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:39 Heat of formation + Delta-G solvation = 73.962994 kcal Electronic energy + Delta-G solvation = -17279.064026 eV Core-core repulsion = 14303.521144 eV Total energy + Delta-G solvation = -2975.542881 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14922 -40.05561 -38.06998 -34.24069 -32.98302 -32.16766 -29.99637 -27.87791 -25.25870 -24.85898 -23.47916 -22.10469 -20.96895 -19.63103 -19.12053 -17.70005 -17.11565 -16.29361 -16.16889 -15.25928 -15.09392 -14.78748 -14.57147 -13.95399 -13.66621 -13.03309 -12.78757 -12.35775 -12.25637 -11.97009 -11.73819 -10.98072 -10.87602 -10.65351 -10.46677 -10.42771 -10.38111 -10.21838 -10.17984 -10.00239 -9.67476 -9.09109 -8.94537 -7.06082 -5.86584 -3.16114 -0.60244 0.46636 1.13939 1.65027 2.71944 2.76827 3.37427 3.43296 3.45528 3.68931 4.35196 4.44434 4.51874 4.87170 5.06508 5.24149 5.32504 5.39559 5.73975 5.76463 5.97662 6.14212 6.19465 6.28828 6.49490 6.54883 6.93348 7.17621 7.31350 7.61550 7.84361 8.31489 9.43194 9.99336 10.33562 11.35623 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.003801 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.298498 B = 7364.449390 C = 7971.145332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.072 0.928 9 N -0.711 5.711 10 C 0.166 3.834 11 H 0.074 0.926 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.101 0.899 15 N -0.695 5.695 16 C 0.601 3.399 17 O -0.517 6.517 18 C -0.283 4.283 19 C 0.072 3.928 20 N -0.253 5.253 21 N -0.258 5.258 22 S 0.427 5.573 23 C -0.158 4.158 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.400 0.600 29 H 0.216 0.784 30 H 0.066 0.934 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.768 -15.935 -1.833 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.053 3.947 11 H 0.092 0.908 12 C -0.219 4.219 13 C 0.010 3.990 14 H 0.119 0.881 15 N -0.346 5.346 16 C 0.384 3.616 17 O -0.393 6.393 18 C -0.424 4.424 19 C -0.095 4.095 20 N -0.117 5.117 21 N -0.240 5.240 22 S 0.561 5.439 23 C -0.198 4.198 24 H 0.066 0.934 25 H 0.221 0.779 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.925 -15.915 -2.417 18.911 hybrid contribution -0.617 0.740 0.771 1.234 sum 9.308 -15.175 -1.646 17.878 Atomic orbital electron populations 1.69665 1.05165 1.25779 1.57207 1.24774 0.95521 0.97846 1.02564 0.86123 0.78803 0.84014 0.77260 1.20503 1.21780 1.21777 1.19327 0.91103 0.84168 1.43265 0.91011 1.42399 1.05808 0.99818 1.86865 1.21688 0.95123 0.85296 0.92590 0.90780 1.24391 1.02285 0.94797 1.00383 1.21949 0.83953 0.94389 0.98745 0.88100 1.45614 1.22834 1.26389 1.39718 1.16447 0.82757 0.80499 0.81917 1.90856 1.54135 1.63171 1.31177 1.28151 1.03995 1.03778 1.06476 1.24484 0.89659 0.94935 1.00409 1.70707 1.12794 1.22758 1.05425 1.78872 1.24390 1.05767 1.14948 1.82716 1.04276 1.28321 1.28548 1.23879 1.01881 0.96992 0.97058 0.93401 0.77943 0.89219 0.92247 0.76538 0.76731 0.91539 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.55 9.97 -15.06 -0.15 -6.70 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.71 -16.69 5.41 -52.50 -0.28 -16.98 16 10 C 0.17 2.92 4.37 -66.98 -0.29 2.63 16 11 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 12 C -0.18 -2.83 7.70 -25.78 -0.20 -3.03 16 13 C 0.11 1.53 4.29 -67.12 -0.29 1.24 16 14 H 0.10 1.39 7.50 -51.93 -0.39 1.00 16 15 N -0.70 -7.86 5.26 -54.17 -0.28 -8.14 16 16 C 0.60 7.27 7.80 -12.63 -0.10 7.17 16 17 O -0.52 -7.91 16.60 5.26 0.09 -7.82 16 18 C -0.28 -2.80 6.81 -35.95 -0.24 -3.04 16 19 C 0.07 0.69 11.55 -17.80 -0.21 0.49 16 20 N -0.25 -2.80 11.54 30.36 0.35 -2.45 16 21 N -0.26 -2.78 12.51 60.35 0.75 -2.03 16 22 S 0.43 3.48 23.05 -107.50 -2.48 1.00 16 23 C -0.16 -2.23 7.57 -25.92 -0.20 -2.43 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.39 9.66 7.92 -40.82 -0.32 9.34 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.40 3.65 8.13 -40.82 -0.33 3.31 16 29 H 0.22 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.39 8.12 -51.92 -0.42 0.97 16 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -31.48 292.27 -6.64 -38.13 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -3.12 Total: 7.81 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: -1.77 Total: -4.06 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: 1.26 Total: -56.05 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 3.48 SS G_CDS: -2.48 Total: 1.00 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.48 -6.64 -38.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020005230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.089 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds