Wall clock time and date at job start Mon Mar 30 2020 00:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00370 * 2 1 4 4 H 1.48496 * 109.46905 * 270.00137 * 3 2 1 5 5 H 1.48506 * 109.46645 * 29.99611 * 3 2 1 6 6 H 1.48496 * 109.47264 * 149.99386 * 3 2 1 7 7 C 1.38820 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99553 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00359 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00198 * 179.97438 * 9 7 2 11 11 H 1.08996 * 112.84800 * 23.80868 * 10 9 7 12 12 C 1.53777 * 113.61160 * 155.00125 * 10 9 7 13 13 C 1.53781 * 87.08336 * 89.20358 * 12 10 9 14 14 H 1.09002 * 113.61228 * 270.88201 * 13 12 10 15 15 N 1.46500 * 113.61711 * 140.06028 * 13 12 10 16 16 C 1.34778 * 119.99919 * 156.52821 * 15 13 12 17 17 O 1.21561 * 120.00126 * 0.02562 * 16 15 13 18 18 C 1.47750 * 119.99834 * 180.02562 * 16 15 13 19 19 C 1.39354 * 124.11550 * 179.72663 * 18 16 15 20 20 N 1.30088 * 112.14723 * 179.84624 * 19 18 16 21 21 S 1.55926 * 108.75344 * 0.40325 * 20 19 18 22 22 N 1.31487 * 124.11839 * 0.02710 * 18 16 15 23 23 C 1.53775 * 113.69461 * 252.53569 * 10 9 7 24 24 H 0.97001 * 120.00195 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99938 * 359.97438 * 9 7 2 26 26 H 1.08997 * 113.61941 * 334.65065 * 12 10 9 27 27 H 1.09009 * 113.68972 * 203.76145 * 12 10 9 28 28 H 0.96998 * 119.99853 * 336.53388 * 15 13 12 29 29 H 1.08005 * 123.92569 * 0.02562 * 19 18 16 30 30 H 1.08993 * 113.61636 * 156.31970 * 23 10 9 31 31 H 1.09008 * 113.61006 * 25.42212 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 3.0655 -3.5639 0.4060 12 6 1.2600 -4.8288 0.5960 13 6 0.7221 -5.0805 -0.8225 14 1 -0.1887 -4.5261 -1.0489 15 7 0.6249 -6.5004 -1.1699 16 6 -0.2314 -6.9022 -2.1300 17 8 -0.9228 -6.0863 -2.7081 18 6 -0.3298 -8.3343 -2.4800 19 6 -1.1878 -8.8440 -3.4526 20 7 -1.0818 -10.1350 -3.5721 21 16 -0.0179 -10.6471 -2.5537 22 7 0.3774 -9.2836 -1.9078 23 6 2.0010 -4.4033 -1.3427 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3881 0.0005 26 1 0.4927 -4.5189 1.3054 27 1 1.8857 -5.6367 0.9755 28 1 1.1768 -7.1514 -0.7089 29 1 -1.8604 -8.2373 -4.0409 30 1 2.8304 -5.0941 -1.4939 31 1 1.8318 -3.7497 -2.1985 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020007647.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:44 Heat of formation + Delta-G solvation = 59.620862 kcal Electronic energy + Delta-G solvation = -17366.208129 eV Core-core repulsion = 14390.043326 eV Total energy + Delta-G solvation = -2976.164803 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31684 -39.49372 -37.86418 -34.36455 -33.70163 -32.51142 -29.75594 -27.73863 -25.13700 -24.76528 -23.46788 -22.20826 -20.48630 -19.65261 -18.92853 -17.56223 -17.36777 -16.29991 -16.01452 -15.56359 -14.89856 -14.54213 -14.30964 -13.94496 -13.13201 -12.75102 -12.54163 -12.16336 -12.01444 -11.74939 -11.65463 -11.47048 -11.32685 -10.87923 -10.82023 -10.29777 -10.18089 -10.15373 -9.77406 -9.69168 -9.49773 -8.93271 -8.77688 -7.01783 -5.79830 -3.09979 0.13832 1.08936 1.32260 1.33489 3.05266 3.10246 3.43188 3.48086 3.49920 4.23933 4.55743 4.67824 4.84101 5.02997 5.20631 5.21672 5.37710 5.45637 5.85718 5.94281 6.07755 6.11221 6.15422 6.33331 6.58180 6.68949 6.74164 6.99125 7.52829 7.69037 8.12420 8.38294 9.49194 10.05014 10.39113 11.42323 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.055338 B = 0.003337 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.858295 B = 8389.513466 C = 8659.992984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.705 5.705 10 C 0.172 3.828 11 H 0.070 0.930 12 C -0.163 4.163 13 C 0.123 3.877 14 H 0.117 0.883 15 N -0.694 5.694 16 C 0.598 3.402 17 O -0.519 6.519 18 C 0.017 3.983 19 C 0.090 3.910 20 N -0.578 5.578 21 S 0.708 5.292 22 N -0.547 5.547 23 C -0.183 4.183 24 H 0.257 0.743 25 H 0.386 0.614 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.405 0.595 29 H 0.216 0.784 30 H 0.070 0.930 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.035 -22.378 -3.214 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.344 5.344 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.203 4.203 13 C 0.019 3.981 14 H 0.135 0.865 15 N -0.343 5.343 16 C 0.377 3.623 17 O -0.394 6.394 18 C -0.158 4.158 19 C -0.104 4.104 20 N -0.419 5.419 21 S 0.750 5.250 22 N -0.397 5.397 23 C -0.226 4.226 24 H 0.067 0.933 25 H 0.221 0.779 26 H 0.093 0.907 27 H 0.098 0.902 28 H 0.240 0.760 29 H 0.232 0.768 30 H 0.089 0.911 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.321 -23.541 -3.231 23.799 hybrid contribution -0.266 2.142 -0.258 2.174 sum 1.054 -21.399 -3.489 21.707 Atomic orbital electron populations 1.69663 1.05152 1.25886 1.57028 1.24784 0.95536 0.97840 1.02553 0.86162 0.78628 0.83643 0.77561 1.21627 1.21747 1.20685 1.19271 0.91120 0.83879 1.43453 0.90905 1.42197 1.05775 0.99389 1.86990 1.20900 0.95343 0.85388 0.92504 0.91226 1.23905 1.00834 1.00012 0.95540 1.22810 1.00169 0.78635 0.96453 0.86519 1.45984 1.40554 1.10375 1.37419 1.16822 0.80886 0.83803 0.80807 1.90871 1.44040 1.52198 1.52282 1.22720 0.98029 0.96396 0.98676 1.23838 0.99838 0.88825 0.97914 1.72278 1.24538 1.16690 1.28347 1.79040 1.19335 1.13203 1.13469 1.72464 1.28884 1.07366 1.30968 1.24331 0.96009 0.99705 1.02510 0.93347 0.77948 0.90663 0.90173 0.75981 0.76803 0.91146 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.25 -6.75 9.97 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.71 -17.40 5.31 -52.64 -0.28 -17.68 16 10 C 0.17 3.30 4.56 -67.12 -0.31 2.99 16 11 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.53 7.57 -25.92 -0.20 -2.73 16 13 C 0.12 1.99 4.10 -67.12 -0.27 1.72 16 14 H 0.12 2.23 7.50 -51.93 -0.39 1.84 16 15 N -0.69 -9.49 5.36 -53.99 -0.29 -9.77 16 16 C 0.60 8.72 7.82 -12.37 -0.10 8.62 16 17 O -0.52 -9.29 16.42 5.31 0.09 -9.20 16 18 C 0.02 0.21 6.81 -83.71 -0.57 -0.36 16 19 C 0.09 0.95 11.22 -17.87 -0.20 0.75 16 20 N -0.58 -5.76 11.41 19.42 0.22 -5.54 16 21 S 0.71 5.44 23.69 -107.50 -2.55 2.90 16 22 N -0.55 -5.66 11.00 23.18 0.26 -5.40 16 23 C -0.18 -3.16 7.68 -25.92 -0.20 -3.36 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.39 10.17 7.90 -40.82 -0.32 9.85 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 1.01 8.11 -51.92 -0.42 0.59 16 28 H 0.40 4.65 8.30 -40.82 -0.34 4.32 16 29 H 0.22 1.94 8.06 -52.48 -0.42 1.51 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.47 8.14 -51.92 -0.42 1.05 16 LS Contribution 290.90 15.07 4.38 4.38 Total: -1.00 -31.93 290.90 -7.69 -39.61 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -3.13 Total: 10.45 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.09 Total: 0.31 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: 0.63 Total: -65.66 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -2.55 Total: 2.90 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.93 -7.69 -39.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020007647.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.234 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds