Wall clock time and date at job start Mon Mar 30 2020 00:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21621 * 120.00130 * 359.97438 * 16 15 14 18 18 C 1.47173 * 119.99855 * 180.02562 * 16 15 14 19 19 C 1.38244 * 128.47625 * 179.70333 * 18 16 15 20 20 N 1.31238 * 111.88830 * 179.80957 * 19 18 16 21 21 N 1.27334 * 120.04107 * 0.52891 * 20 19 18 22 22 S 1.56638 * 109.73627 * 359.69945 * 21 20 19 23 23 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 25 25 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 26 26 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 27 27 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 28 28 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 29 29 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 30 30 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 31 31 H 1.08002 * 124.05305 * 359.96848 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4107 1.8371 18 6 6.5409 -3.4207 0.0601 19 6 7.8533 -3.5128 0.4846 20 7 8.6879 -3.0066 -0.3925 21 7 8.2465 -2.5016 -1.4749 22 16 6.6849 -2.6176 -1.5144 23 1 -0.4849 0.8401 -0.0004 24 1 -0.7200 -2.1579 0.6255 25 1 -0.4978 -2.9554 -0.9903 26 1 -0.1719 -4.9834 0.3522 27 1 0.3904 -4.0224 1.7929 28 1 2.8169 -3.6293 1.8207 29 1 2.9555 -5.2160 1.0261 30 1 4.0519 -3.2609 -0.6924 31 1 8.1556 -3.9513 1.4242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038085015.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:52 Heat of formation + Delta-G solvation = 98.078323 kcal Electronic energy + Delta-G solvation = -17883.580082 eV Core-core repulsion = 14909.082920 eV Total energy + Delta-G solvation = -2974.497162 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.90171 -39.49938 -38.16263 -34.35202 -32.37631 -32.15312 -28.71419 -28.03549 -26.91292 -23.57356 -23.27851 -21.72038 -20.62657 -19.49551 -19.14466 -17.61763 -16.64547 -16.01794 -15.92946 -15.34013 -14.95628 -14.61753 -14.34294 -13.88802 -13.46721 -13.09091 -12.79363 -12.10763 -12.01498 -11.63935 -11.22817 -11.09633 -10.84772 -10.68005 -10.41979 -10.23520 -10.19676 -9.95883 -9.94710 -9.91787 -9.39133 -8.90653 -8.84397 -7.00467 -5.86726 -3.20012 -0.35695 0.71797 1.38167 1.87670 2.99287 3.12596 3.30895 3.36232 3.38601 3.91872 4.33543 4.59916 4.73335 5.08836 5.28327 5.44802 5.45822 5.57627 5.79009 5.94096 6.19384 6.28397 6.47244 6.53191 6.65871 7.12310 7.28912 7.43977 7.48531 7.56494 7.87279 8.12442 8.92183 9.60136 10.52158 11.30220 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.006621 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.111858 B = 4227.940043 C = 5356.680016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.151 3.849 11 C -0.160 4.160 12 C 0.125 3.875 13 H 0.051 0.949 14 C 0.120 3.880 15 N -0.701 5.701 16 C 0.596 3.404 17 O -0.526 6.526 18 C -0.279 4.279 19 C 0.067 3.933 20 N -0.255 5.255 21 N -0.264 5.264 22 S 0.433 5.567 23 H 0.254 0.746 24 H 0.072 0.928 25 H 0.026 0.974 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.403 0.597 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -8.565 -2.129 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.201 4.201 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.026 3.974 11 C -0.199 4.199 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.351 5.351 16 C 0.378 3.622 17 O -0.404 6.404 18 C -0.420 4.420 19 C -0.100 4.100 20 N -0.119 5.119 21 N -0.245 5.245 22 S 0.567 5.433 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.238 0.762 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 8.585 -7.683 -2.984 11.901 hybrid contribution 0.242 0.581 0.773 0.997 sum 8.827 -7.102 -2.211 11.543 Atomic orbital electron populations 1.69818 1.04980 1.25438 1.55922 1.24765 0.95625 0.97412 1.02252 0.86234 0.78775 0.83771 0.77704 1.21415 1.21477 1.20642 1.18788 0.89868 0.81357 1.44601 0.90377 1.45667 1.02679 0.98456 1.85977 1.22034 0.88619 0.90181 0.96585 1.23667 0.96640 0.99157 1.00412 1.22457 0.91885 0.87972 0.95950 0.93227 1.21983 0.82352 0.98659 0.97349 1.45902 1.05681 1.60183 1.23319 1.16491 0.81457 0.79491 0.84754 1.90823 1.86260 1.43555 1.19766 1.28204 0.99875 1.11581 1.02344 1.24436 0.86555 0.98080 1.00904 1.70687 1.32221 1.11181 0.97841 1.78817 1.08187 1.20170 1.17373 1.82854 1.08885 1.38903 1.12642 0.93546 0.90919 0.95588 0.92231 0.90105 0.90428 0.91569 0.76203 0.76858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.93 11.51 55.49 0.64 -25.29 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.22 -5.56 10.55 -15.06 -0.16 -5.72 16 8 H 0.08 1.88 7.51 -52.49 -0.39 1.49 16 9 N -0.60 -13.76 3.65 -176.98 -0.65 -14.40 16 10 C 0.15 3.26 7.39 -8.50 -0.06 3.20 16 11 C -0.16 -2.68 8.03 -26.21 -0.21 -2.89 16 12 C 0.13 2.20 4.10 -72.39 -0.30 1.90 16 13 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.12 1.97 5.52 -4.04 -0.02 1.94 16 15 N -0.70 -10.85 5.33 -61.46 -0.33 -11.17 16 16 C 0.60 9.28 7.80 -12.63 -0.10 9.18 16 17 O -0.53 -9.54 16.98 5.26 0.09 -9.45 16 18 C -0.28 -3.71 6.81 -35.95 -0.25 -3.96 16 19 C 0.07 0.83 11.55 -17.80 -0.21 0.63 16 20 N -0.26 -3.50 11.54 30.36 0.35 -3.15 16 21 N -0.26 -3.60 12.51 60.35 0.75 -2.85 16 22 S 0.43 5.13 23.05 -107.50 -2.48 2.65 16 23 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.07 1.77 7.13 -51.93 -0.37 1.40 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 28 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.40 5.90 7.81 -40.82 -0.32 5.58 16 31 H 0.22 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -30.65 290.34 -6.84 -37.49 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.18 Total: 1.49 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.40 Total: 4.11 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 0.77 Total: -56.86 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.48 Total: 2.65 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.65 -6.84 -37.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038085015.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.566 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds