Wall clock time and date at job start Mon Mar 30 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48499 * 109.46896 * 270.00102 * 3 2 1 5 5 H 1.48506 * 109.46723 * 29.99872 * 3 2 1 6 6 H 1.48496 * 109.47378 * 149.99559 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53503 * 87.98291 * 207.38069 * 10 9 7 12 12 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 13 13 H 1.09001 * 113.46506 * 267.40214 * 12 9 7 14 14 C 1.53001 * 113.46558 * 37.83696 * 12 9 7 15 15 N 1.46504 * 109.46966 * 285.49627 * 14 12 9 16 16 C 1.34779 * 119.99668 * 180.02562 * 15 14 12 17 17 O 1.21621 * 120.00130 * 359.97438 * 16 15 14 18 18 C 1.47173 * 119.99855 * 180.02562 * 16 15 14 19 19 C 1.38244 * 128.47625 * 179.70333 * 18 16 15 20 20 N 1.31238 * 111.88830 * 179.80957 * 19 18 16 21 21 N 1.27334 * 120.04107 * 0.52891 * 20 19 18 22 22 S 1.56638 * 109.73627 * 359.69945 * 21 20 19 23 23 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 24 24 H 1.09003 * 113.46750 * 322.15715 * 10 9 7 25 25 H 1.09000 * 113.47312 * 92.60160 * 10 9 7 26 26 H 1.08996 * 114.20600 * 220.34475 * 11 10 9 27 27 H 1.08998 * 114.38368 * 87.53582 * 11 10 9 28 28 H 1.09002 * 109.47370 * 45.49563 * 14 12 9 29 29 H 1.09003 * 109.46961 * 165.49707 * 14 12 9 30 30 H 0.96999 * 120.00354 * 0.02562 * 15 14 12 31 31 H 1.08002 * 124.05305 * 359.96848 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3445 -4.0911 0.7061 12 6 1.6797 -3.8155 0.0005 13 1 1.7403 -4.2477 -0.9983 14 6 2.9022 -4.1398 0.8615 15 7 4.1160 -3.6902 0.1751 16 6 5.3216 -3.8729 0.7492 17 8 5.4019 -4.4107 1.8371 18 6 6.5409 -3.4207 0.0601 19 6 7.8533 -3.5128 0.4846 20 7 8.6879 -3.0066 -0.3925 21 7 8.2465 -2.5016 -1.4749 22 16 6.6849 -2.6176 -1.5144 23 1 -0.4849 0.8401 -0.0004 24 1 -0.7200 -2.1579 0.6255 25 1 -0.4978 -2.9554 -0.9903 26 1 -0.1719 -4.9834 0.3522 27 1 0.3904 -4.0224 1.7929 28 1 2.8169 -3.6293 1.8207 29 1 2.9555 -5.2160 1.0261 30 1 4.0519 -3.2609 -0.6924 31 1 8.1556 -3.9513 1.4242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038085015.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:51 Heat of formation + Delta-G solvation = 75.920812 kcal Electronic energy + Delta-G solvation = -17884.540904 eV Core-core repulsion = 14909.082920 eV Total energy + Delta-G solvation = -2975.457984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93258 -40.79348 -39.66965 -35.67899 -34.23848 -33.24664 -30.09681 -29.72774 -28.09782 -25.36866 -24.51763 -23.05192 -21.80539 -20.97950 -20.29123 -18.95679 -18.20864 -17.22799 -17.16541 -16.89073 -16.21672 -15.99234 -15.66497 -15.46946 -14.91442 -14.65335 -13.85263 -13.63852 -13.33744 -13.03261 -12.96394 -12.67541 -12.57200 -12.33872 -11.86315 -11.62286 -11.52577 -11.31651 -11.20838 -10.98324 -10.93795 -10.80965 -10.14693 -8.86875 -7.86100 -5.17182 -1.38810 -0.27083 0.38428 0.85516 1.44830 1.46172 1.52792 1.81035 1.94173 2.47423 2.93247 3.36228 3.43558 3.58766 3.67177 3.97343 4.13752 4.38237 4.55974 4.65890 4.72752 4.90048 5.10806 5.12178 5.27365 5.36203 5.61957 5.77892 5.99510 6.26952 6.52204 6.90730 6.95805 7.66436 8.65987 9.31625 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017484 B = 0.006621 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.111858 B = 4227.940043 C = 5356.680016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.283 1.283 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.205 4.205 8 H 0.089 0.911 9 N -0.630 5.630 10 C 0.141 3.859 11 C -0.133 4.133 12 C 0.132 3.868 13 H 0.074 0.926 14 C 0.128 3.872 15 N -0.701 5.701 16 C 0.601 3.399 17 O -0.555 6.555 18 C -0.300 4.300 19 C 0.079 3.921 20 N -0.272 5.272 21 N -0.284 5.284 22 S 0.486 5.514 23 H 0.245 0.755 24 H 0.034 0.966 25 H 0.023 0.977 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.407 0.593 31 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.083 -9.914 -2.594 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.789 3.211 4 H -0.210 1.210 5 H -0.229 1.229 6 H -0.197 1.197 7 C -0.334 4.334 8 H 0.107 0.893 9 N -0.356 5.356 10 C 0.015 3.985 11 C -0.172 4.172 12 C 0.025 3.975 13 H 0.092 0.908 14 C 0.004 3.996 15 N -0.351 5.351 16 C 0.385 3.615 17 O -0.434 6.434 18 C -0.441 4.441 19 C -0.089 4.089 20 N -0.136 5.136 21 N -0.265 5.265 22 S 0.620 5.380 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.243 0.757 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.825 -9.063 -3.471 13.810 hybrid contribution -0.131 0.925 0.878 1.282 sum 9.694 -8.138 -2.593 12.920 Atomic orbital electron populations 1.69996 1.06275 1.25140 1.58783 1.25465 0.96306 1.00318 1.03983 0.85359 0.77767 0.80437 0.77578 1.21036 1.22870 1.19666 1.19181 0.90565 0.82404 1.41217 0.89324 1.45990 1.03672 1.00027 1.85916 1.22058 0.87800 0.92207 0.96413 1.23483 0.95643 0.98026 1.00037 1.22618 0.92889 0.84703 0.97246 0.90847 1.21806 0.82192 0.99844 0.95769 1.45871 1.05572 1.60242 1.23437 1.16608 0.81831 0.78755 0.84319 1.90808 1.86724 1.44886 1.21023 1.28002 0.99324 1.13210 1.03554 1.24777 0.86074 0.96869 1.01162 1.70744 1.32742 1.11957 0.98113 1.78683 1.09526 1.20558 1.17728 1.82653 1.07317 1.37007 1.10979 0.94628 0.94739 0.95873 0.88168 0.90103 0.92980 0.89013 0.75699 0.74886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.40 11.51 21.65 0.25 -55.15 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.96 43.89 29.55 68.60 2.03 45.92 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.21 -10.29 10.55 84.03 0.89 -9.40 16 8 H 0.09 4.13 7.51 -2.91 -0.02 4.11 16 9 N -0.63 -28.18 3.65 -713.85 -2.61 -30.79 16 10 C 0.14 6.02 7.39 83.18 0.61 6.64 16 11 C -0.13 -4.11 8.03 30.94 0.25 -3.86 16 12 C 0.13 4.27 4.10 41.80 0.17 4.44 16 13 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.13 3.85 5.52 86.38 0.48 4.33 16 15 N -0.70 -20.05 5.33 -466.61 -2.49 -22.53 16 16 C 0.60 17.51 7.80 86.59 0.68 18.18 16 17 O -0.55 -19.19 16.98 -4.10 -0.07 -19.26 16 18 C -0.30 -7.34 6.81 24.62 0.17 -7.17 16 19 C 0.08 1.80 11.55 84.78 0.98 2.78 16 20 N -0.27 -6.96 11.54 -57.87 -0.67 -7.63 16 21 N -0.28 -7.18 12.51 37.02 0.46 -6.72 16 22 S 0.49 10.39 23.05 -56.49 -1.30 9.09 16 23 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 24 H 0.03 1.72 7.13 -2.39 -0.02 1.71 16 25 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.08 2.52 8.12 -2.39 -0.02 2.50 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.41 10.87 7.81 -92.71 -0.72 10.14 16 31 H 0.24 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -66.27 290.34 0.74 -65.53 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.45 Total: 8.80 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: 4.69 Total: 12.74 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -5.05 Total: -122.82 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.07 Total: -19.26 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 16 Polarization: 10.39 SS G_CDS: -1.30 Total: 9.09 kcal Total: -66.27 0.74 -65.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038085015.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.448 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds