Wall clock time and date at job start Mon Mar 30 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47418 * 2 1 4 4 N 1.46501 * 109.47179 * 240.00584 * 2 1 3 5 5 C 1.34774 * 120.00578 * 84.99566 * 4 2 1 6 6 S 1.71206 * 119.99700 * 0.02562 * 5 4 2 7 7 N 1.34779 * 120.00392 * 180.02562 * 5 4 2 8 8 C 1.37074 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.07996 * 120.00217 * 359.97438 * 8 7 5 10 10 C 1.38868 * 119.99586 * 180.02562 * 8 7 5 11 11 N 1.31493 * 120.00313 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 119.99993 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.46721 * 59.99406 * 12 10 8 14 14 H 1.48497 * 109.47160 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46726 * 300.00027 * 12 10 8 16 16 C 1.50696 * 109.47305 * 120.00423 * 2 1 3 17 17 C 1.38248 * 119.97128 * 259.99808 * 16 2 1 18 18 C 1.38196 * 120.02483 * 179.97438 * 17 16 2 19 19 C 1.38458 * 119.97492 * 0.02562 * 18 17 16 20 20 F 1.35104 * 120.02786 * 179.97438 * 19 18 17 21 21 C 1.38465 * 119.94675 * 0.24873 * 19 18 17 22 22 C 1.38196 * 119.97501 * 359.51590 * 21 19 18 23 23 H 1.09001 * 109.47126 * 59.99859 * 1 2 3 24 24 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47282 * 299.99630 * 1 2 3 26 26 H 0.97005 * 119.99673 * 264.99790 * 4 2 1 27 27 H 0.96997 * 119.99628 * 359.97438 * 7 5 4 28 28 H 0.96996 * 119.99599 * 179.97438 * 11 10 8 29 29 H 1.08002 * 119.98915 * 359.97438 * 17 16 2 30 30 H 1.07996 * 120.01603 * 179.97438 * 18 17 16 31 31 H 1.08007 * 120.01064 * 179.75151 * 21 19 18 32 32 H 1.07993 * 119.98776 * 180.24915 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 16 1.7403 1.6431 -2.4339 7 7 2.5958 -0.6536 -3.4578 8 6 2.7271 0.0305 -4.6384 9 1 2.4706 1.0784 -4.6868 10 6 3.1890 -0.6244 -5.7725 11 7 3.5009 -1.9005 -5.7138 12 14 3.3674 0.3075 -7.3817 13 1 4.3234 1.4293 -7.2006 14 1 3.8758 -0.6110 -8.4319 15 1 2.0452 0.8452 -7.7913 16 6 2.0323 -0.7105 1.2304 17 6 2.4587 0.0200 2.3240 18 6 2.9191 -0.6305 3.4530 19 6 2.9538 -2.0142 3.4885 20 9 3.4042 -2.6511 4.5916 21 6 2.5318 -2.7445 2.3905 22 6 2.0672 -2.0920 1.2643 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 2.2490 -1.6317 -1.1527 27 1 2.8265 -1.5947 -3.4143 28 1 3.8231 -2.3579 -6.5061 29 1 2.4319 1.0993 2.2959 30 1 3.2525 -0.0597 4.3071 31 1 2.5622 -3.8239 2.4155 32 1 1.7343 -2.6616 0.4093 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249614607.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:29 Heat of formation + Delta-G solvation = -16.806504 kcal Electronic energy + Delta-G solvation = -17343.851164 eV Core-core repulsion = 14344.452260 eV Total energy + Delta-G solvation = -2999.398904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.99789 -39.64644 -37.68518 -35.46492 -32.65313 -31.32055 -30.69180 -28.66707 -25.46555 -23.61989 -23.35659 -22.07199 -20.89577 -18.67260 -18.04403 -17.39188 -16.48688 -15.70881 -15.58600 -15.21442 -14.76512 -14.30284 -14.02913 -13.69400 -13.68389 -13.55132 -13.18706 -12.89376 -12.28888 -12.03372 -11.81644 -11.50450 -11.16007 -11.08931 -10.80865 -10.72248 -10.53656 -9.86776 -9.57503 -9.23542 -8.68362 -8.40318 -6.96104 -6.65327 -6.05773 -4.25919 1.00824 1.10562 2.62524 3.08146 3.11696 3.21868 3.35508 3.50691 3.84752 4.09104 4.13660 4.60825 4.67031 4.76213 4.83793 5.07079 5.15377 5.25639 5.62286 5.67874 5.78268 5.85038 5.98257 6.03722 6.12011 6.21776 6.51636 6.67129 6.78411 7.11109 7.25293 7.32594 8.06483 8.38087 8.87596 9.03530 10.17937 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.031001 B = 0.004222 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.990386 B = 6630.135989 C = 7172.458669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.201 3.799 3 H 0.118 0.882 4 N -0.715 5.715 5 C 0.461 3.539 6 S -0.760 6.760 7 N -0.471 5.471 8 C -0.289 4.289 9 H 0.144 0.856 10 C 0.033 3.967 11 N -0.877 5.877 12 Si 0.950 3.050 13 H -0.264 1.264 14 H -0.281 1.281 15 H -0.264 1.264 16 C -0.090 4.090 17 C -0.077 4.077 18 C -0.151 4.151 19 C 0.089 3.911 20 F -0.144 7.144 21 C -0.151 4.151 22 C -0.088 4.088 23 H 0.082 0.918 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.380 0.620 27 H 0.392 0.608 28 H 0.283 0.717 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -4.195 13.087 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.095 3.905 3 H 0.136 0.864 4 N -0.354 5.354 5 C 0.099 3.901 6 S -0.635 6.635 7 N -0.073 5.073 8 C -0.423 4.423 9 H 0.162 0.838 10 C -0.175 4.175 11 N -0.511 5.511 12 Si 0.774 3.226 13 H -0.189 1.189 14 H -0.207 1.207 15 H -0.189 1.189 16 C -0.091 4.091 17 C -0.096 4.096 18 C -0.169 4.169 19 C 0.070 3.930 20 F -0.122 7.122 21 C -0.169 4.169 22 C -0.106 4.106 23 H 0.101 0.899 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.216 0.784 27 H 0.228 0.772 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.459 -3.192 12.821 13.292 hybrid contribution 0.705 -1.865 -0.442 2.042 sum -0.754 -5.058 12.379 13.393 Atomic orbital electron populations 1.22181 0.94396 1.01414 1.03407 1.19803 0.94124 0.97655 0.78938 0.86416 1.44192 1.71703 1.11556 1.07953 1.20919 0.93723 0.93980 0.81522 1.92404 1.78261 0.98762 1.94061 1.41059 1.47407 1.11606 1.07249 1.20741 1.39604 0.98471 0.83505 0.83821 1.25709 0.94934 0.95813 1.01076 1.69664 1.39888 1.09304 1.32287 0.85582 0.79809 0.78888 0.78315 1.18865 1.20661 1.18861 1.20294 0.98683 0.93745 0.96353 1.20940 0.96301 1.00676 0.91662 1.21131 1.03161 0.92463 1.00179 1.17726 1.00550 0.90814 0.83949 1.91486 1.86957 1.82312 1.51494 1.21104 1.02160 1.00674 0.93010 1.20854 0.98266 0.94039 0.97451 0.89915 0.93512 0.92209 0.78426 0.77217 0.90653 0.84388 0.84691 0.84838 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.41 37.16 0.35 -1.92 16 2 C 0.20 3.09 2.54 -69.09 -0.18 2.91 16 3 H 0.12 2.10 6.68 -51.93 -0.35 1.75 16 4 N -0.72 -12.45 5.03 -56.65 -0.28 -12.74 16 5 C 0.46 10.33 7.91 -86.92 -0.69 9.64 16 6 S -0.76 -19.54 25.97 -107.50 -2.79 -22.33 16 7 N -0.47 -11.04 5.29 -12.53 -0.07 -11.11 16 8 C -0.29 -7.39 9.51 -14.97 -0.14 -7.53 16 9 H 0.14 3.94 6.22 -52.49 -0.33 3.61 16 10 C 0.03 0.80 5.50 -17.46 -0.10 0.70 16 11 N -0.88 -21.47 13.05 55.49 0.72 -20.75 16 12 Si 0.95 19.43 29.55 -169.99 -5.02 14.41 16 13 H -0.26 -5.43 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 15 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 16 C -0.09 -1.14 4.96 -104.62 -0.52 -1.66 16 17 C -0.08 -0.88 9.67 -39.59 -0.38 -1.27 16 18 C -0.15 -1.62 10.03 -39.52 -0.40 -2.02 16 19 C 0.09 1.03 7.30 -39.42 -0.29 0.74 16 20 F -0.14 -1.73 17.27 2.25 0.04 -1.69 16 21 C -0.15 -1.65 10.03 -39.51 -0.40 -2.05 16 22 C -0.09 -1.01 9.05 -39.59 -0.36 -1.37 16 23 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.38 5.72 6.88 -40.82 -0.28 5.44 16 27 H 0.39 8.70 7.91 -40.82 -0.32 8.38 16 28 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.14 1.39 8.04 -52.49 -0.42 0.96 16 30 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.13 1.35 6.91 -52.49 -0.36 0.98 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -28.99 294.21 -9.34 -38.32 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -3.28 Total: 15.26 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.09 Total: -3.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.37 Total: -44.59 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Atomic # 16 Polarization: -19.54 SS G_CDS: -2.79 Total: -22.33 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.99 -9.34 -38.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249614607.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.518 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds