Wall clock time and date at job start Mon Mar 30 2020 00:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 N 1.46493 * 109.47299 * 124.72356 * 3 2 1 5 5 C 1.46499 * 120.00031 * 270.00423 * 4 3 2 6 6 C 1.50696 * 109.47541 * 89.99838 * 5 4 3 7 7 H 1.07997 * 119.99931 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00421 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99547 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47235 * 60.00056 * 10 8 6 12 12 H 1.48500 * 109.47150 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47319 * 300.00152 * 10 8 6 14 14 C 1.38548 * 120.00195 * 89.99951 * 4 3 2 15 15 C 1.39587 * 120.47266 * 5.00196 * 14 4 3 16 16 C 1.38295 * 118.47340 * 179.97438 * 15 14 4 17 17 Cl 1.73604 * 120.36566 * 179.97438 * 16 15 14 18 18 N 1.32619 * 119.26062 * 0.02562 * 16 15 14 19 19 C 1.32460 * 120.91354 * 359.97438 * 18 16 15 20 20 N 1.38389 * 119.17253 * 179.97438 * 19 18 16 21 21 N 1.32464 * 121.65836 * 359.71635 * 19 18 16 22 22 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 23 23 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 25 25 H 1.08997 * 109.47325 * 244.72857 * 3 2 1 26 26 H 1.09004 * 109.46539 * 4.72066 * 3 2 1 27 27 H 1.09003 * 109.47282 * 209.99739 * 5 4 3 28 28 H 1.09002 * 109.46972 * 329.99589 * 5 4 3 29 29 H 0.97004 * 119.99677 * 180.02562 * 9 8 6 30 30 H 1.07997 * 120.76537 * 359.97438 * 15 14 4 31 31 H 0.96999 * 119.99944 * 0.02562 * 20 19 18 32 32 H 0.97005 * 120.00209 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3346 1.1352 5 6 2.5487 1.8707 2.4255 6 6 1.9616 0.7597 3.2572 7 1 1.9209 -0.2454 2.8642 8 6 1.4773 1.0260 4.5204 9 7 1.5274 2.2499 4.9992 10 14 0.7502 -0.3514 5.5516 11 1 1.7792 -1.3985 5.7753 12 1 0.3049 0.1918 6.8600 13 1 -0.4110 -0.9428 4.8396 14 6 4.2807 0.8555 0.9886 15 6 4.7437 0.4390 -0.2607 16 6 6.0403 -0.0316 -0.3600 17 17 6.6665 -0.5628 -1.8896 18 7 6.7997 -0.0735 0.7265 19 6 6.3327 0.3286 1.8990 20 7 7.1562 0.2686 3.0096 21 7 5.0989 0.7913 2.0344 22 1 -0.5401 -0.9353 0.0004 23 1 -0.5400 0.9354 -0.0004 24 1 1.8500 -0.9353 0.0045 25 1 2.6251 1.4004 -0.9293 26 1 1.3582 2.1319 0.0846 27 1 3.4010 2.3047 2.9486 28 1 1.7936 2.6394 2.2609 29 1 1.1870 2.4372 5.8880 30 1 4.1041 0.4833 -1.1298 31 1 8.0632 -0.0644 2.9235 32 1 6.8268 0.5604 3.8741 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291929529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:14 Heat of formation + Delta-G solvation = 62.017581 kcal Electronic energy + Delta-G solvation = -18060.710527 eV Core-core repulsion = 15082.605947 eV Total energy + Delta-G solvation = -2978.104580 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.79081 -38.68059 -37.81141 -35.47425 -35.03391 -34.51743 -32.92535 -31.12978 -29.16263 -26.98066 -25.43480 -24.11099 -22.65067 -20.81821 -19.22800 -18.81514 -18.49278 -17.13636 -16.88881 -16.51764 -16.25545 -16.06432 -15.64172 -15.60196 -15.04182 -14.42762 -14.19067 -13.48550 -13.25913 -13.08057 -12.85219 -12.58223 -12.56386 -12.35181 -12.14653 -11.92815 -11.66143 -11.50224 -11.18315 -10.57072 -10.18966 -10.03826 -9.48187 -8.75166 -8.10458 -6.23812 0.21915 0.51790 0.63515 1.38266 1.39123 1.40714 1.47931 2.20319 2.40411 2.54010 3.02191 3.16761 3.66396 3.97164 4.07353 4.24935 4.28370 4.40931 4.56914 4.81982 4.92508 5.07881 5.14811 5.35545 5.70509 5.77172 5.80318 5.94660 6.13045 6.18647 6.40471 6.49666 6.71075 6.86708 7.42985 7.63325 8.92547 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.006560 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.170334 B = 4267.339724 C = 5227.850267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.174 4.174 3 C 0.147 3.853 4 N -0.573 5.573 5 C 0.273 3.727 6 C -0.514 4.514 7 H 0.046 0.954 8 C 0.015 3.985 9 N -0.927 5.927 10 Si 0.952 3.048 11 H -0.281 1.281 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.477 3.523 15 C -0.333 4.333 16 C 0.278 3.722 17 Cl -0.009 7.009 18 N -0.627 5.627 19 C 0.603 3.397 20 N -0.806 5.806 21 N -0.635 5.635 22 H 0.105 0.895 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.016 0.984 28 H 0.018 0.982 29 H 0.264 0.736 30 H 0.168 0.832 31 H 0.423 0.577 32 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.416 -3.722 -11.281 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.193 4.193 3 C 0.025 3.975 4 N -0.280 5.280 5 C 0.152 3.848 6 C -0.553 4.553 7 H 0.064 0.936 8 C -0.184 4.184 9 N -0.568 5.568 10 Si 0.778 3.222 11 H -0.207 1.207 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.230 3.770 15 C -0.366 4.366 16 C 0.108 3.892 17 Cl 0.019 6.981 18 N -0.359 5.359 19 C 0.242 3.758 20 N -0.356 5.356 21 N -0.370 5.370 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.115 0.885 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.034 0.966 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.185 0.815 31 H 0.256 0.744 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.782 -3.588 -10.473 12.489 hybrid contribution -0.598 -0.647 0.534 1.030 sum 5.184 -4.235 -9.939 11.983 Atomic orbital electron populations 1.23889 0.95494 1.02508 0.98949 1.23169 0.96667 0.98291 1.01197 1.20849 0.91770 0.96295 0.88545 1.47076 1.07030 1.60658 1.13271 1.18828 0.93900 0.93039 0.79051 1.21486 1.38607 0.94988 1.00219 0.93602 1.25596 0.96629 0.97503 0.98629 1.70019 1.47948 1.20568 1.18221 0.85707 0.78772 0.79556 0.78155 1.20654 1.20699 1.19405 1.18324 0.85811 0.85199 0.87715 1.21577 0.97893 1.18151 0.98950 1.21252 0.88837 0.91008 0.88141 1.98381 1.87969 1.88052 1.23678 1.67101 1.39277 1.31269 0.98285 1.18969 0.84958 0.85672 0.86197 1.41629 1.15439 1.71613 1.06953 1.67521 1.05259 1.30321 1.33906 0.87676 0.87820 0.88510 0.87523 0.89299 0.96583 0.96381 0.92728 0.81475 0.74370 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.77 14.32 67.79 0.97 -3.80 16 2 C -0.17 -5.35 9.85 25.65 0.25 -5.10 16 3 C 0.15 4.58 5.75 85.64 0.49 5.08 16 4 N -0.57 -23.31 2.54 -712.11 -1.81 -25.12 16 5 C 0.27 13.70 5.20 85.63 0.45 14.15 16 6 C -0.51 -27.90 9.39 25.60 0.24 -27.66 16 7 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 8 C 0.02 0.83 5.46 84.66 0.46 1.29 16 9 N -0.93 -53.60 13.29 21.45 0.28 -53.31 16 10 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 C 0.48 19.15 7.38 133.17 0.98 20.13 16 15 C -0.33 -10.97 9.12 22.61 0.21 -10.77 16 16 C 0.28 9.02 7.32 84.59 0.62 9.64 16 17 Cl -0.01 -0.24 29.15 -2.72 -0.08 -0.32 16 18 N -0.63 -21.96 10.45 -189.09 -1.98 -23.94 16 19 C 0.60 22.36 8.67 261.52 2.27 24.62 16 20 N -0.81 -23.04 9.07 -59.80 -0.54 -23.58 16 21 N -0.64 -27.35 9.33 -195.61 -1.82 -29.17 16 22 H 0.10 2.64 8.06 -2.91 -0.02 2.62 16 23 H 0.10 2.71 7.84 -2.91 -0.02 2.69 16 24 H 0.10 3.10 8.06 -2.91 -0.02 3.08 16 25 H 0.11 2.63 6.04 -2.39 -0.01 2.61 16 26 H 0.09 2.66 7.54 -2.39 -0.02 2.64 16 27 H 0.02 0.91 7.47 -2.39 -0.02 0.89 16 28 H 0.02 0.95 7.89 -2.39 -0.02 0.93 16 29 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.17 4.47 6.15 -2.91 -0.02 4.45 16 31 H 0.42 9.39 8.94 -92.71 -0.83 8.56 16 32 H 0.42 11.58 8.94 -92.70 -0.83 10.75 16 Total: -1.00 -64.42 300.21 2.53 -61.89 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.49 Total: 20.02 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 6.94 Total: 27.58 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -5.87 Total: -155.13 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -64.42 2.53 -61.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291929529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.903 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds