Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48508 * 109.47010 * 240.00132 * 3 2 1 5 5 H 1.48498 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47432 * 120.00211 * 3 2 1 7 7 C 1.37880 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00289 * 173.66045 * 7 2 1 9 9 C 1.50700 * 119.99437 * 353.65691 * 7 2 1 10 10 C 1.52991 * 115.55295 * 85.67344 * 9 7 2 11 11 N 1.46502 * 109.46997 * 39.15341 * 10 9 7 12 12 C 1.38546 * 120.00081 * 185.34308 * 11 10 9 13 13 C 1.39584 * 120.47337 * 359.72509 * 12 11 10 14 14 C 1.38294 * 118.47409 * 179.70624 * 13 12 11 15 15 Cl 1.73599 * 120.37083 * 180.26231 * 14 13 12 16 16 N 1.32632 * 119.25873 * 0.56953 * 14 13 12 17 17 C 1.32460 * 120.90904 * 359.71476 * 16 14 13 18 18 N 1.38399 * 119.16940 * 180.02562 * 17 16 14 19 19 N 1.32461 * 121.66213 * 359.97438 * 17 16 14 20 20 C 1.53003 * 117.51353 * 231.37732 * 9 7 2 21 21 C 1.52994 * 60.00261 * 107.47989 * 20 9 7 22 22 H 0.97008 * 119.99562 * 5.03269 * 1 2 3 23 23 H 1.09002 * 109.47636 * 279.15319 * 10 9 7 24 24 H 1.09001 * 109.47034 * 159.14994 * 10 9 7 25 25 H 0.96998 * 119.99820 * 5.62293 * 11 10 9 26 26 H 1.07998 * 120.76814 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99904 * 179.97438 * 18 17 16 28 28 H 0.96992 * 119.99838 * 359.97438 * 18 17 16 29 29 H 1.09005 * 117.49466 * 214.97410 * 20 9 7 30 30 H 1.08998 * 117.49885 * 359.97438 * 20 9 7 31 31 H 1.08996 * 117.49967 * 252.50811 * 21 20 9 32 32 H 1.09003 * 117.52065 * 107.47482 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1038 9 6 1.2579 -2.4952 0.1431 10 6 0.7094 -3.0881 -1.1562 11 7 1.6834 -2.8906 -2.2326 12 6 1.3616 -3.2471 -3.5321 13 6 0.1143 -3.8006 -3.8261 14 6 -0.1656 -4.1356 -5.1383 15 17 -1.7039 -4.8208 -5.5602 16 7 0.7565 -3.9333 -6.0698 17 6 1.9339 -3.4117 -5.7598 18 7 2.8695 -3.2156 -6.7606 19 7 2.2381 -3.0719 -4.5161 20 6 1.7404 -3.4722 1.2172 21 6 0.4345 -2.7003 1.4163 22 1 -0.4850 0.8369 -0.0737 23 1 -0.2253 -2.5912 -1.4163 24 1 0.5286 -4.1545 -1.0210 25 1 2.5551 -2.5140 -2.0347 26 1 -0.6170 -3.9595 -3.0474 27 1 3.7354 -2.8341 -6.5471 28 1 2.6594 -3.4597 -7.6755 29 1 1.6671 -4.5374 0.9980 30 1 2.5983 -3.1741 1.8198 31 1 0.4331 -1.8944 2.1500 32 1 -0.4983 -3.2574 1.3280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309594934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = 70.479068 kcal Electronic energy + Delta-G solvation = -17800.462620 eV Core-core repulsion = 14822.724958 eV Total energy + Delta-G solvation = -2977.737662 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.47130 -37.39509 -36.63776 -35.43112 -33.84562 -32.10290 -31.91482 -29.31981 -26.27808 -25.37692 -23.48423 -22.14173 -21.21598 -19.53702 -18.09454 -17.74819 -16.27114 -15.57286 -15.44553 -15.06283 -14.78586 -14.68777 -14.29260 -14.05667 -13.49450 -12.98193 -12.64338 -12.26997 -11.69975 -11.22245 -11.18489 -11.04018 -10.89528 -10.60809 -10.50722 -10.29279 -10.02334 -9.69950 -9.06462 -8.87889 -8.58399 -8.43207 -8.19750 -7.46256 -6.18136 -4.27279 1.45022 1.85961 1.88027 3.22935 3.28636 3.30053 3.31733 3.85109 4.28480 4.29188 5.02616 5.10281 5.21322 5.23281 5.70547 5.73144 5.87084 6.12776 6.23619 6.30096 6.35015 6.60908 6.71814 6.95466 7.02066 7.19556 7.32814 7.36158 7.50052 7.71914 7.84923 8.20596 8.32814 8.74168 8.79168 9.41189 10.89513 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.005601 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.614991 B = 4998.246420 C = 5573.609794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.026 3.974 10 C 0.162 3.838 11 N -0.660 5.660 12 C 0.490 3.510 13 C -0.327 4.327 14 C 0.286 3.714 15 Cl -0.035 7.035 16 N -0.623 5.623 17 C 0.618 3.382 18 N -0.824 5.824 19 N -0.630 5.630 20 C -0.210 4.210 21 C -0.147 4.147 22 H 0.263 0.737 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.415 0.585 26 H 0.146 0.854 27 H 0.413 0.587 28 H 0.411 0.589 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 -7.121 -8.152 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.026 3.974 10 C 0.038 3.962 11 N -0.286 5.286 12 C 0.240 3.760 13 C -0.359 4.359 14 C 0.117 3.883 15 Cl -0.006 7.006 16 N -0.355 5.355 17 C 0.257 3.743 18 N -0.373 5.373 19 N -0.366 5.366 20 C -0.247 4.247 21 C -0.185 4.185 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.254 0.746 26 H 0.164 0.836 27 H 0.244 0.756 28 H 0.242 0.758 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.022 -6.934 -8.559 11.063 hybrid contribution 0.156 1.029 0.361 1.102 sum 1.178 -5.905 -8.198 10.171 Atomic orbital electron populations 1.69946 1.05921 1.27210 1.47600 1.24960 0.94798 0.98975 0.93892 0.86693 0.79743 0.83048 0.78793 1.20114 1.21241 1.20087 1.20241 0.92864 0.88462 1.52687 0.92100 1.18957 0.98819 0.94196 0.85472 1.21137 0.91421 0.96825 0.86822 1.44837 1.19630 1.62242 1.01934 1.18108 0.87031 0.84745 0.86089 1.21484 1.00462 1.17073 0.96919 1.20998 0.87513 0.91060 0.88707 1.98385 1.25340 1.82483 1.94438 1.66997 1.02848 1.28141 1.37497 1.18526 0.84871 0.85572 0.85301 1.41598 1.16430 1.71335 1.07969 1.67326 1.36679 1.33300 0.99312 1.23113 0.98798 0.95613 1.07172 1.22498 0.92229 1.01121 1.02685 0.92699 0.91042 0.94187 0.74577 0.83578 0.75594 0.75819 0.91489 0.90261 0.89738 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.12 12.90 55.43 0.71 -22.41 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 3 Si 0.89 20.22 29.55 -169.99 -5.02 15.20 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.51 -12.44 7.48 -34.44 -0.26 -12.70 16 8 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.03 0.58 1.72 -155.66 -0.27 0.31 16 10 C 0.16 3.25 5.07 -4.04 -0.02 3.23 16 11 N -0.66 -12.97 5.44 -60.29 -0.33 -13.30 16 12 C 0.49 9.33 7.70 -154.83 -1.19 8.14 16 13 C -0.33 -5.78 9.16 -39.06 -0.36 -6.14 16 14 C 0.29 4.86 7.32 -17.19 -0.13 4.74 16 15 Cl -0.03 -0.50 29.15 -51.86 -1.51 -2.01 16 16 N -0.62 -10.65 10.45 -11.11 -0.12 -10.76 16 17 C 0.62 10.28 8.67 -322.90 -2.80 7.48 16 18 N -0.82 -9.75 9.07 29.75 0.27 -9.48 16 19 N -0.63 -11.61 10.49 -13.18 -0.14 -11.75 16 20 C -0.21 -4.13 9.88 -26.73 -0.26 -4.40 16 21 C -0.15 -3.13 9.43 -26.73 -0.25 -3.39 16 22 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 23 H 0.07 1.56 7.70 -51.93 -0.40 1.16 16 24 H 0.04 0.72 7.94 -51.93 -0.41 0.31 16 25 H 0.42 8.45 7.66 -40.82 -0.31 8.14 16 26 H 0.15 2.43 6.83 -52.49 -0.36 2.08 16 27 H 0.41 4.16 8.94 -40.82 -0.37 3.80 16 28 H 0.41 3.90 8.94 -40.82 -0.37 3.53 16 29 H 0.07 1.18 8.08 -51.93 -0.42 0.77 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 296.84 15.07 4.47 4.47 Total: -1.00 -27.08 296.84 -10.74 -37.82 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -3.45 Total: 13.01 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -5.64 Total: -0.80 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: 0.40 Total: -67.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.51 Total: -2.01 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.08 -10.74 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309594934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.301 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds