Wall clock time and date at job start Mon Mar 30 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00123 * 2 1 4 4 H 1.48508 * 109.47010 * 240.00132 * 3 2 1 5 5 H 1.48498 * 109.47162 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47432 * 120.00211 * 3 2 1 7 7 C 1.37880 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00289 * 173.66045 * 7 2 1 9 9 C 1.50700 * 119.99437 * 353.65691 * 7 2 1 10 10 C 1.52991 * 115.55295 * 85.67344 * 9 7 2 11 11 N 1.46502 * 109.46997 * 39.15341 * 10 9 7 12 12 C 1.38546 * 120.00081 * 185.34308 * 11 10 9 13 13 C 1.39584 * 120.47337 * 359.72509 * 12 11 10 14 14 C 1.38294 * 118.47409 * 179.70624 * 13 12 11 15 15 Cl 1.73599 * 120.37083 * 180.26231 * 14 13 12 16 16 N 1.32632 * 119.25873 * 0.56953 * 14 13 12 17 17 C 1.32460 * 120.90904 * 359.71476 * 16 14 13 18 18 N 1.38399 * 119.16940 * 180.02562 * 17 16 14 19 19 N 1.32461 * 121.66213 * 359.97438 * 17 16 14 20 20 C 1.53003 * 117.51353 * 231.37732 * 9 7 2 21 21 C 1.52994 * 60.00261 * 107.47989 * 20 9 7 22 22 H 0.97008 * 119.99562 * 5.03269 * 1 2 3 23 23 H 1.09002 * 109.47636 * 279.15319 * 10 9 7 24 24 H 1.09001 * 109.47034 * 159.14994 * 10 9 7 25 25 H 0.96998 * 119.99820 * 5.62293 * 11 10 9 26 26 H 1.07998 * 120.76814 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99904 * 179.97438 * 18 17 16 28 28 H 0.96992 * 119.99838 * 359.97438 * 18 17 16 29 29 H 1.09005 * 117.49466 * 214.97410 * 20 9 7 30 30 H 1.08998 * 117.49885 * 359.97438 * 20 9 7 31 31 H 1.08996 * 117.49967 * 252.50811 * 21 20 9 32 32 H 1.09003 * 117.52065 * 107.47482 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0796 -1.1969 -0.1038 9 6 1.2579 -2.4952 0.1431 10 6 0.7094 -3.0881 -1.1562 11 7 1.6834 -2.8906 -2.2326 12 6 1.3616 -3.2471 -3.5321 13 6 0.1143 -3.8006 -3.8261 14 6 -0.1656 -4.1356 -5.1383 15 17 -1.7039 -4.8208 -5.5602 16 7 0.7565 -3.9333 -6.0698 17 6 1.9339 -3.4117 -5.7598 18 7 2.8695 -3.2156 -6.7606 19 7 2.2381 -3.0719 -4.5161 20 6 1.7404 -3.4722 1.2172 21 6 0.4345 -2.7003 1.4163 22 1 -0.4850 0.8369 -0.0737 23 1 -0.2253 -2.5912 -1.4163 24 1 0.5286 -4.1545 -1.0210 25 1 2.5551 -2.5140 -2.0347 26 1 -0.6170 -3.9595 -3.0474 27 1 3.7354 -2.8341 -6.5471 28 1 2.6594 -3.4597 -7.6755 29 1 1.6671 -4.5374 0.9980 30 1 2.5983 -3.1741 1.8198 31 1 0.4331 -1.8944 2.1500 32 1 -0.4983 -3.2574 1.3280 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309594934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:33 Heat of formation + Delta-G solvation = 55.648949 kcal Electronic energy + Delta-G solvation = -17801.105702 eV Core-core repulsion = 14822.724958 eV Total energy + Delta-G solvation = -2978.380744 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.79893 -38.99236 -37.86791 -36.85398 -35.08108 -34.00014 -33.30921 -30.62273 -27.93321 -27.14542 -24.81445 -23.51163 -22.85005 -21.23948 -19.46874 -19.03745 -17.96958 -16.94689 -16.73741 -16.54894 -16.36617 -16.07421 -15.81098 -15.47319 -15.04565 -14.49808 -14.32406 -13.50585 -13.48336 -12.98617 -12.85103 -12.49126 -12.40319 -12.31320 -11.93971 -11.84770 -11.41249 -11.24655 -10.85317 -10.44291 -10.23647 -10.01898 -9.56148 -8.87291 -8.11550 -6.22751 0.12263 0.48927 0.61642 1.41100 1.43636 1.48309 2.02383 2.41218 2.55859 2.93804 3.17950 3.49118 3.75149 3.91699 4.25911 4.38386 4.43989 4.53982 4.68385 4.71547 4.87964 5.05508 5.12821 5.30157 5.53291 5.66950 5.72450 5.76682 6.19071 6.35150 6.37129 6.49308 6.83299 6.85427 7.46691 7.53078 8.95033 Molecular weight = 268.08amu Principal moments of inertia in cm(-1) A = 0.018780 B = 0.005601 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.614991 B = 4998.246420 C = 5573.609794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.000 4.000 10 C 0.177 3.823 11 N -0.667 5.667 12 C 0.478 3.522 13 C -0.337 4.337 14 C 0.283 3.717 15 Cl -0.011 7.011 16 N -0.626 5.626 17 C 0.607 3.393 18 N -0.800 5.800 19 N -0.645 5.645 20 C -0.185 4.185 21 C -0.153 4.153 22 H 0.259 0.741 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.410 0.590 26 H 0.152 0.848 27 H 0.423 0.577 28 H 0.424 0.576 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.312 -8.057 -9.038 12.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.543 4.543 8 H 0.074 0.926 9 C -0.001 4.001 10 C 0.053 3.947 11 N -0.294 5.294 12 C 0.229 3.771 13 C -0.370 4.370 14 C 0.113 3.887 15 Cl 0.018 6.982 16 N -0.358 5.358 17 C 0.246 3.754 18 N -0.352 5.352 19 N -0.382 5.382 20 C -0.222 4.222 21 C -0.191 4.191 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.247 0.753 26 H 0.170 0.830 27 H 0.256 0.744 28 H 0.257 0.743 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.503 -7.877 -9.494 12.428 hybrid contribution 0.038 1.267 0.547 1.381 sum 1.541 -6.610 -8.947 11.230 Atomic orbital electron populations 1.70041 1.06820 1.27263 1.49352 1.25520 0.95374 1.01365 0.94277 0.85930 0.78621 0.80329 0.78621 1.20190 1.21625 1.19742 1.20496 0.92811 0.89769 1.51256 0.92635 1.19075 0.99842 0.94359 0.86775 1.20894 0.90328 0.97589 0.85876 1.44712 1.19222 1.63164 1.02299 1.18272 0.87745 0.85129 0.85961 1.21541 1.00245 1.17633 0.97557 1.21230 0.88339 0.90536 0.88611 1.98389 1.23629 1.81959 1.94247 1.67135 1.03052 1.28267 1.37387 1.18929 0.85523 0.85342 0.85620 1.41592 1.15911 1.69926 1.07724 1.67335 1.36955 1.34021 0.99920 1.23113 0.97549 0.96601 1.04914 1.22423 0.93783 1.01142 1.01730 0.93211 0.93338 0.91925 0.75268 0.83019 0.74416 0.74255 0.88709 0.90447 0.92220 0.90102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.26 12.90 21.45 0.28 -47.98 16 2 C 0.04 1.87 5.39 84.66 0.46 2.33 16 3 Si 0.94 41.74 29.55 68.60 2.03 43.77 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.51 -24.88 7.48 25.60 0.19 -24.69 16 8 H 0.06 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.00 0.01 1.72 -52.93 -0.09 -0.08 16 10 C 0.18 6.99 5.07 86.38 0.44 7.43 16 11 N -0.67 -25.96 5.44 -344.67 -1.87 -27.83 16 12 C 0.48 17.90 7.70 133.17 1.03 18.93 16 13 C -0.34 -11.63 9.16 22.61 0.21 -11.42 16 14 C 0.28 9.21 7.32 84.59 0.62 9.83 16 15 Cl -0.01 -0.29 29.15 -2.72 -0.08 -0.37 16 16 N -0.63 -20.37 10.45 -189.08 -1.98 -22.35 16 17 C 0.61 19.24 8.67 261.52 2.27 21.51 16 18 N -0.80 -17.24 9.07 -59.79 -0.54 -17.78 16 19 N -0.65 -23.18 10.49 -195.60 -2.05 -25.23 16 20 C -0.18 -6.93 9.88 30.59 0.30 -6.63 16 21 C -0.15 -6.40 9.43 30.59 0.29 -6.11 16 22 H 0.26 13.62 8.32 -92.70 -0.77 12.85 16 23 H 0.05 2.12 7.70 -2.39 -0.02 2.10 16 24 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 25 H 0.41 16.63 7.66 -92.71 -0.71 15.92 16 26 H 0.15 4.94 6.83 -2.91 -0.02 4.92 16 27 H 0.42 7.61 8.94 -92.71 -0.83 6.78 16 28 H 0.42 6.99 8.94 -92.71 -0.83 6.16 16 29 H 0.09 3.04 8.08 -2.38 -0.02 3.02 16 30 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 31 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.61 296.84 0.31 -56.30 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -1.18 Total: 30.39 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 5.71 Total: 11.09 kcal Atomic # 7 Polarization: -135.01 SS G_CDS: -6.17 Total: -141.17 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -56.61 0.31 -56.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309594934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.945 kcal (2) G-P(sol) polarization free energy of solvation -56.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds