Wall clock time and date at job start Mon Mar 30 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47114 * 274.62015 * 3 2 1 5 5 H 1.48504 * 109.46894 * 34.61717 * 3 2 1 6 6 H 1.48499 * 109.47403 * 154.61526 * 3 2 1 7 7 C 1.40227 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00625 * 197.40515 * 7 2 1 9 9 C 1.41100 * 119.99695 * 17.40189 * 7 2 1 10 10 C 1.40893 * 120.10016 * 204.81568 * 9 7 2 11 11 C 1.36302 * 119.89204 * 180.02562 * 10 9 7 12 12 C 1.40042 * 120.10702 * 0.02562 * 11 10 9 13 13 C 1.47593 * 119.89783 * 179.97438 * 12 11 10 14 14 O 1.21598 * 120.00185 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99638 * 179.97438 * 13 12 11 16 16 C 1.39832 * 119.99548 * 185.19994 * 15 13 12 17 17 C 1.39316 * 120.49168 * 32.52576 * 16 15 13 18 18 C 1.38498 * 118.35594 * 180.23885 * 17 16 15 19 19 C 1.38279 * 119.24086 * 359.48182 * 18 17 16 20 20 N 1.31868 * 120.92386 * 0.29571 * 19 18 17 21 21 C 1.31807 * 121.79937 * 359.97438 * 20 19 18 22 22 C 1.40034 * 120.20210 * 0.25010 * 12 11 10 23 23 C 1.36309 * 120.10757 * 359.44645 * 22 12 11 24 24 H 0.97005 * 120.00666 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05839 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.94902 * 180.02562 * 11 10 9 27 27 H 0.96998 * 120.00218 * 5.20285 * 15 13 12 28 28 H 1.07997 * 120.82463 * 0.02562 * 17 16 15 29 29 H 1.08001 * 120.38120 * 179.75267 * 18 17 16 30 30 H 1.07994 * 119.54052 * 180.27454 * 19 18 17 31 31 H 1.08000 * 119.66809 * 179.97438 * 21 20 19 32 32 H 1.08000 * 119.94856 * 179.70212 * 22 12 11 33 33 H 1.07997 * 120.05590 * 180.26906 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3902 2.1028 -1.3955 5 1 1.4900 2.6225 0.7954 6 1 3.5833 1.4141 0.6002 7 6 2.0077 -1.2143 0.0005 8 1 3.0505 -1.2356 0.2803 9 6 1.3506 -2.4085 -0.3644 10 6 1.8254 -3.6486 0.1067 11 6 1.1878 -4.7996 -0.2489 12 6 0.0629 -4.7510 -1.0815 13 6 -0.6237 -6.0003 -1.4642 14 8 -0.2127 -7.0695 -1.0561 15 7 -1.7068 -5.9558 -2.2650 16 6 -2.4217 -7.1258 -2.5396 17 6 -2.5180 -8.1359 -1.5849 18 6 -3.2327 -9.2780 -1.9055 19 6 -3.8317 -9.3735 -3.1482 20 7 -3.7257 -8.3972 -4.0283 21 6 -3.0507 -7.2959 -3.7661 22 6 -0.4092 -3.5213 -1.5569 23 6 0.2182 -2.3645 -1.2016 24 1 -0.4851 0.8400 -0.0004 25 1 2.6936 -3.6872 0.7479 26 1 1.5507 -5.7506 0.1121 27 1 -1.9904 -5.1123 -2.6509 28 1 -2.0440 -8.0324 -0.6200 29 1 -3.3249 -10.0831 -1.1915 30 1 -4.3939 -10.2600 -3.4016 31 1 -2.9857 -6.5182 -4.5126 32 1 -1.2742 -3.4891 -2.2027 33 1 -0.1491 -1.4163 -1.5652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336352937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:14 Heat of formation + Delta-G solvation = 13.974793 kcal Electronic energy + Delta-G solvation = -18600.959967 eV Core-core repulsion = 15590.912194 eV Total energy + Delta-G solvation = -3010.047773 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.50664 -38.90492 -37.27372 -34.67643 -34.01870 -32.04290 -30.78360 -29.59819 -29.32664 -26.09695 -23.78615 -23.28361 -21.79654 -21.04800 -19.77795 -17.92727 -17.61395 -16.86065 -16.50341 -15.80973 -15.52034 -14.48709 -14.31327 -14.10690 -13.90663 -13.58675 -13.33632 -12.99006 -12.82741 -12.29029 -12.05046 -12.00809 -11.53790 -11.37954 -11.05591 -10.82835 -10.61115 -10.17008 -9.70766 -9.68302 -9.57552 -9.46876 -9.01147 -8.11710 -7.85410 -7.67149 -7.15686 -4.73333 1.14120 1.39450 2.08631 2.83540 2.88823 2.91777 2.92498 3.42580 3.60653 3.66000 3.97438 4.43055 4.56864 4.91984 5.02849 5.19588 5.38412 5.43611 5.64842 5.81358 5.90003 6.17975 6.20258 6.28220 6.47478 6.65103 6.70357 6.86257 6.98090 7.02127 7.30145 7.47717 7.62017 7.73399 7.90840 7.94908 8.01863 8.26966 8.50012 8.61588 8.75071 9.75725 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.045534 B = 0.003644 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.775169 B = 7681.872252 C = 8111.720241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.129 3.871 10 C -0.238 4.238 11 C -0.017 4.017 12 C -0.291 4.291 13 C 0.571 3.429 14 O -0.556 6.556 15 N -0.678 5.678 16 C 0.121 3.879 17 C -0.086 4.086 18 C -0.151 4.151 19 C 0.062 3.938 20 N -0.467 5.467 21 C 0.061 3.939 22 C -0.062 4.062 23 C -0.177 4.177 24 H 0.288 0.712 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.411 0.589 28 H 0.147 0.853 29 H 0.134 0.866 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.089 0.911 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 -5.357 -3.412 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.126 3.874 10 C -0.258 4.258 11 C -0.036 4.036 12 C -0.296 4.296 13 C 0.369 3.631 14 O -0.437 6.437 15 N -0.323 5.323 16 C 0.022 3.978 17 C -0.115 4.115 18 C -0.171 4.171 19 C -0.096 4.096 20 N -0.176 5.176 21 C -0.099 4.099 22 C -0.081 4.081 23 C -0.196 4.196 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.120 0.880 27 H 0.249 0.751 28 H 0.164 0.836 29 H 0.152 0.848 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.107 0.893 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.378 -5.958 -3.874 8.912 hybrid contribution 0.532 1.313 0.700 1.580 sum -4.846 -4.645 -3.174 7.425 Atomic orbital electron populations 1.69729 1.07970 1.30306 1.30961 1.26142 0.94862 1.02071 0.91830 0.86152 0.80683 0.79651 0.79588 1.18885 1.19871 1.18140 1.19937 0.98366 0.91104 1.36899 0.89473 1.17822 0.90356 0.92233 0.86993 1.20721 1.04552 0.92589 1.07906 1.20354 0.92594 0.97252 0.93435 1.18729 1.04955 0.90427 1.15441 1.18793 0.78024 0.90127 0.76199 1.90650 1.65926 1.31650 1.55454 1.43615 1.28889 1.08848 1.50966 1.18923 0.94956 0.89527 0.94363 1.21721 0.96760 0.93132 0.99844 1.22046 0.98195 0.98425 0.98444 1.22587 0.99096 0.97449 0.90472 1.67570 1.15472 1.00661 1.33860 1.22551 0.97458 0.96344 0.93581 1.20467 0.97340 0.92573 0.97709 1.20991 0.99765 0.96923 1.01895 0.90025 0.88190 0.87973 0.75146 0.83559 0.84803 0.83022 0.82790 0.89252 0.86019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.61 10.94 55.56 0.61 -17.00 16 2 C 0.07 1.63 5.14 -17.31 -0.09 1.54 16 3 Si 0.92 16.56 29.59 -169.99 -5.03 11.53 16 4 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 7 C -0.44 -10.39 9.05 -37.75 -0.34 -10.73 16 8 H 0.09 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.13 3.15 5.57 -106.80 -0.60 2.56 16 10 C -0.24 -5.51 9.73 -39.27 -0.38 -5.90 16 11 C -0.02 -0.39 9.52 -39.60 -0.38 -0.76 16 12 C -0.29 -6.31 5.89 -104.73 -0.62 -6.93 16 13 C 0.57 11.55 7.53 -12.44 -0.09 11.46 16 14 O -0.56 -12.41 13.99 5.28 0.07 -12.34 16 15 N -0.68 -11.16 5.29 -10.69 -0.06 -11.22 16 16 C 0.12 1.90 6.31 -83.57 -0.53 1.37 16 17 C -0.09 -1.34 8.77 -39.08 -0.34 -1.69 16 18 C -0.15 -1.90 10.10 -39.47 -0.40 -2.30 16 19 C 0.06 0.77 11.18 -17.52 -0.20 0.57 16 20 N -0.47 -6.64 10.35 -13.08 -0.14 -6.78 16 21 C 0.06 0.86 11.12 -17.32 -0.19 0.66 16 22 C -0.06 -1.29 9.47 -39.60 -0.37 -1.67 16 23 C -0.18 -4.12 8.63 -39.27 -0.34 -4.46 16 24 H 0.29 5.94 8.29 -40.82 -0.34 5.60 16 25 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 26 H 0.10 2.21 7.63 -52.48 -0.40 1.81 16 27 H 0.41 5.77 6.83 -40.82 -0.28 5.49 16 28 H 0.15 2.49 6.46 -52.49 -0.34 2.15 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.09 1.55 6.38 -52.49 -0.34 1.22 16 33 H 0.12 2.88 6.15 -52.49 -0.32 2.56 16 LS Contribution 291.40 15.07 4.39 4.39 Total: -1.00 -27.48 291.40 -7.93 -35.42 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.92 Total: 12.27 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -4.87 Total: -16.27 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: 0.42 Total: -35.00 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.07 Total: -12.34 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.48 -7.93 -35.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336352937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.392 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds