Wall clock time and date at job start Mon Mar 30 2020 01:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86803 * 120.00021 * 2 1 4 4 H 1.48499 * 109.47114 * 274.62015 * 3 2 1 5 5 H 1.48504 * 109.46894 * 34.61717 * 3 2 1 6 6 H 1.48499 * 109.47403 * 154.61526 * 3 2 1 7 7 C 1.40227 * 120.00600 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00625 * 197.40515 * 7 2 1 9 9 C 1.41100 * 119.99695 * 17.40189 * 7 2 1 10 10 C 1.40893 * 120.10016 * 204.81568 * 9 7 2 11 11 C 1.36302 * 119.89204 * 180.02562 * 10 9 7 12 12 C 1.40042 * 120.10702 * 0.02562 * 11 10 9 13 13 C 1.47593 * 119.89783 * 179.97438 * 12 11 10 14 14 O 1.21598 * 120.00185 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99638 * 179.97438 * 13 12 11 16 16 C 1.39832 * 119.99548 * 185.19994 * 15 13 12 17 17 C 1.39316 * 120.49168 * 32.52576 * 16 15 13 18 18 C 1.38498 * 118.35594 * 180.23885 * 17 16 15 19 19 C 1.38279 * 119.24086 * 359.48182 * 18 17 16 20 20 N 1.31868 * 120.92386 * 0.29571 * 19 18 17 21 21 C 1.31807 * 121.79937 * 359.97438 * 20 19 18 22 22 C 1.40034 * 120.20210 * 0.25010 * 12 11 10 23 23 C 1.36309 * 120.10757 * 359.44645 * 22 12 11 24 24 H 0.97005 * 120.00666 * 0.02562 * 1 2 3 25 25 H 1.08000 * 120.05839 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.94902 * 180.02562 * 11 10 9 27 27 H 0.96998 * 120.00218 * 5.20285 * 15 13 12 28 28 H 1.07997 * 120.82463 * 0.02562 * 17 16 15 29 29 H 1.08001 * 120.38120 * 179.75267 * 18 17 16 30 30 H 1.07994 * 119.54052 * 180.27454 * 19 18 17 31 31 H 1.08000 * 119.66809 * 179.97438 * 21 20 19 32 32 H 1.08000 * 119.94856 * 179.70212 * 22 12 11 33 33 H 1.07997 * 120.05590 * 180.26906 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3902 2.1028 -1.3955 5 1 1.4900 2.6225 0.7954 6 1 3.5833 1.4141 0.6002 7 6 2.0077 -1.2143 0.0005 8 1 3.0505 -1.2356 0.2803 9 6 1.3506 -2.4085 -0.3644 10 6 1.8254 -3.6486 0.1067 11 6 1.1878 -4.7996 -0.2489 12 6 0.0629 -4.7510 -1.0815 13 6 -0.6237 -6.0003 -1.4642 14 8 -0.2127 -7.0695 -1.0561 15 7 -1.7068 -5.9558 -2.2650 16 6 -2.4217 -7.1258 -2.5396 17 6 -2.5180 -8.1359 -1.5849 18 6 -3.2327 -9.2780 -1.9055 19 6 -3.8317 -9.3735 -3.1482 20 7 -3.7257 -8.3972 -4.0283 21 6 -3.0507 -7.2959 -3.7661 22 6 -0.4092 -3.5213 -1.5569 23 6 0.2182 -2.3645 -1.2016 24 1 -0.4851 0.8400 -0.0004 25 1 2.6936 -3.6872 0.7479 26 1 1.5507 -5.7506 0.1121 27 1 -1.9904 -5.1123 -2.6509 28 1 -2.0440 -8.0324 -0.6200 29 1 -3.3249 -10.0831 -1.1915 30 1 -4.3939 -10.2600 -3.4016 31 1 -2.9857 -6.5182 -4.5126 32 1 -1.2742 -3.4891 -2.2027 33 1 -0.1491 -1.4163 -1.5652 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336352937.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:14 Heat of formation + Delta-G solvation = -1.331064 kcal Electronic energy + Delta-G solvation = -18601.623679 eV Core-core repulsion = 15590.912194 eV Total energy + Delta-G solvation = -3010.711485 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.78254 -40.31570 -38.94600 -36.08294 -35.72475 -33.16080 -32.33696 -31.35072 -30.67584 -27.76913 -25.04178 -24.49305 -23.31029 -22.76685 -21.31182 -19.44475 -19.20825 -18.08528 -17.77720 -17.24279 -16.94394 -15.99750 -15.82603 -15.66299 -15.13332 -14.94214 -14.76095 -14.54077 -14.08889 -13.95969 -13.67854 -13.29699 -13.06939 -12.88067 -12.64708 -12.42232 -11.95106 -11.78805 -11.40490 -11.18320 -11.06087 -10.67545 -10.31923 -9.64069 -9.53260 -9.23622 -8.82826 -6.52437 -0.00962 0.26208 0.48336 1.12811 1.38414 1.42419 1.53656 2.02966 2.08842 2.15583 2.69906 2.90409 3.60139 3.64906 3.87080 3.90805 4.12548 4.17899 4.28539 4.40553 4.45495 4.68967 4.89958 4.99130 5.06452 5.13876 5.19603 5.25518 5.32493 5.54884 5.75309 5.82000 5.89864 5.95936 6.18762 6.45740 6.50955 6.73266 6.84396 6.96254 7.21755 8.11815 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.045534 B = 0.003644 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.775169 B = 7681.872252 C = 8111.720241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.468 4.468 8 H 0.087 0.913 9 C 0.103 3.897 10 C -0.252 4.252 11 C -0.028 4.028 12 C -0.297 4.297 13 C 0.574 3.426 14 O -0.582 6.582 15 N -0.664 5.664 16 C 0.093 3.907 17 C -0.106 4.106 18 C -0.145 4.145 19 C 0.070 3.930 20 N -0.483 5.483 21 C 0.067 3.933 22 C -0.052 4.052 23 C -0.197 4.197 24 H 0.298 0.702 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.422 0.578 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.190 0.810 31 H 0.177 0.823 32 H 0.126 0.874 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -5.701 -4.482 9.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.495 4.495 8 H 0.105 0.895 9 C 0.100 3.900 10 C -0.272 4.272 11 C -0.047 4.047 12 C -0.302 4.302 13 C 0.370 3.630 14 O -0.464 6.464 15 N -0.309 5.309 16 C -0.004 4.004 17 C -0.134 4.134 18 C -0.165 4.165 19 C -0.087 4.087 20 N -0.191 5.191 21 C -0.093 4.093 22 C -0.071 4.071 23 C -0.216 4.216 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.261 0.739 28 H 0.143 0.857 29 H 0.182 0.818 30 H 0.207 0.793 31 H 0.194 0.806 32 H 0.144 0.856 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.671 -6.318 -4.966 10.444 hybrid contribution 0.795 1.222 1.008 1.773 sum -5.876 -5.096 -3.958 8.727 Atomic orbital electron populations 1.69745 1.09221 1.31779 1.30971 1.26932 0.95561 1.04852 0.90810 0.85083 0.79157 0.75222 0.79746 1.18297 1.18953 1.18107 1.20184 0.98679 0.92136 1.38459 0.89510 1.18164 0.91245 0.92900 0.87737 1.20858 1.05131 0.92713 1.08484 1.20507 0.93166 0.97168 0.93869 1.18992 1.04724 0.91547 1.14934 1.18546 0.78755 0.89071 0.76591 1.90634 1.66923 1.32212 1.56644 1.43288 1.27794 1.09974 1.49858 1.19096 0.96374 0.89441 0.95514 1.21773 0.97789 0.94588 0.99291 1.22362 0.96841 0.98010 0.99277 1.23244 0.97892 0.97887 0.89708 1.67683 1.15834 1.01097 1.34502 1.22847 0.96357 0.96892 0.93194 1.20746 0.97779 0.91443 0.97174 1.21030 1.00382 0.97469 1.02767 0.89033 0.87651 0.87687 0.73852 0.85675 0.81779 0.79316 0.80624 0.85614 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.66 10.94 21.87 0.24 -36.42 16 2 C 0.04 1.71 5.14 85.35 0.44 2.15 16 3 Si 0.99 33.60 29.59 68.60 2.03 35.63 16 4 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 5 H -0.27 -8.58 7.11 99.48 0.71 -7.87 16 6 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 7 C -0.47 -22.85 9.05 23.46 0.21 -22.63 16 8 H 0.09 4.07 7.91 -2.91 -0.02 4.05 16 9 C 0.10 5.16 5.57 -21.28 -0.12 5.04 16 10 C -0.25 -12.08 9.73 22.47 0.22 -11.86 16 11 C -0.03 -1.29 9.52 22.26 0.21 -1.07 16 12 C -0.30 -12.96 5.89 -19.94 -0.12 -13.08 16 13 C 0.57 23.14 7.53 86.71 0.65 23.80 16 14 O -0.58 -26.19 13.99 -4.03 -0.06 -26.25 16 15 N -0.66 -21.17 5.29 -305.99 -1.62 -22.79 16 16 C 0.09 2.80 6.31 38.28 0.24 3.04 16 17 C -0.11 -3.20 8.77 22.59 0.20 -3.00 16 18 C -0.14 -3.28 10.10 22.34 0.23 -3.05 16 19 C 0.07 1.49 11.18 84.70 0.95 2.44 16 20 N -0.48 -12.33 10.35 -195.29 -2.02 -14.35 16 21 C 0.07 1.72 11.12 84.85 0.94 2.67 16 22 C -0.05 -2.19 9.47 22.26 0.21 -1.98 16 23 C -0.20 -9.36 8.63 22.47 0.19 -9.16 16 24 H 0.30 12.20 8.29 -92.70 -0.77 11.43 16 25 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 26 H 0.11 4.68 7.63 -2.91 -0.02 4.65 16 27 H 0.42 11.13 6.83 -92.71 -0.63 10.50 16 28 H 0.13 4.30 6.46 -2.91 -0.02 4.28 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.18 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.13 4.17 6.38 -2.91 -0.02 4.15 16 33 H 0.12 5.55 6.15 -2.91 -0.02 5.53 16 Total: -1.00 -60.06 291.40 3.55 -56.51 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: 0.52 Total: 34.37 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: 4.46 Total: -26.71 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: -3.40 Total: -73.55 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 33.60 SS G_CDS: 2.03 Total: 35.63 kcal Total: -60.06 3.55 -56.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336352937.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.175 kcal (2) G-P(sol) polarization free energy of solvation -60.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds