Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46802 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.46985 * 29.99671 * 3 2 1 6 6 H 1.48500 * 109.46961 * 149.99714 * 3 2 1 7 7 C 1.37879 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99879 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00094 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.33638 * 126.04034 * 89.97401 * 12 11 10 14 14 N 1.31783 * 114.50019 * 179.97438 * 13 12 11 15 15 C 1.29024 * 117.12778 * 0.02562 * 14 13 12 16 16 C 1.50695 * 124.92117 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.28058 * 194.38548 * 16 15 14 18 18 C 1.54951 * 110.30655 * 72.18975 * 16 15 14 19 19 C 1.55312 * 100.94225 * 204.64087 * 18 16 15 20 20 C 1.54380 * 102.25056 * 34.13333 * 19 18 16 21 21 O 1.43245 * 107.59000 * 338.64209 * 20 19 18 22 22 S 1.70978 * 110.16657 * 0.22351 * 15 14 13 23 23 H 0.96997 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46995 * 59.99851 * 9 7 2 25 25 H 1.09005 * 109.47084 * 300.00507 * 9 7 2 26 26 H 1.00905 * 110.99495 * 56.04342 * 10 9 7 27 27 H 1.08995 * 109.46804 * 60.00230 * 11 10 9 28 28 H 1.09002 * 109.46913 * 300.00366 * 11 10 9 29 29 H 1.07999 * 122.75387 * 359.97438 * 13 12 11 30 30 H 1.09000 * 111.12523 * 322.56117 * 18 16 15 31 31 H 1.09000 * 111.12500 * 86.68234 * 18 16 15 32 32 H 1.08999 * 110.84840 * 275.94257 * 19 18 16 33 33 H 1.08999 * 110.84966 * 152.32055 * 19 18 16 34 34 H 1.08996 * 109.83192 * 219.13077 * 20 19 18 35 35 H 1.09002 * 109.83458 * 98.15431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0022 12 6 5.9340 -4.0518 0.0027 13 6 6.1758 -4.8004 -1.0776 14 7 6.5742 -6.0284 -0.8135 15 6 6.6815 -6.3577 0.4294 16 6 7.1198 -7.7102 0.9288 17 1 6.8874 -7.8152 1.9886 18 6 8.6376 -7.9068 0.6869 19 6 8.7303 -9.4565 0.6397 20 6 7.3874 -9.8452 -0.0152 21 8 6.4815 -8.7516 0.1729 22 16 6.2478 -5.0393 1.4280 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8753 -0.6802 -0.8888 26 1 3.6260 -3.0957 -0.7790 27 1 5.8466 -2.1134 0.8918 28 1 5.8466 -2.1148 -0.8882 29 1 6.0546 -4.4294 -2.0846 30 1 8.9446 -7.4658 -0.2614 31 1 9.2227 -7.5026 1.5130 32 1 8.8063 -9.8713 1.6448 33 1 9.5698 -9.7762 0.0224 34 1 6.9894 -10.7411 0.4611 35 1 7.5337 -10.0251 -1.0802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336665972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = 0.091810 kcal Electronic energy + Delta-G solvation = -17321.626299 eV Core-core repulsion = 14446.420466 eV Total energy + Delta-G solvation = -2875.205833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13624 -38.98159 -35.76815 -32.77007 -32.43507 -31.49001 -29.62173 -27.13519 -25.42287 -23.56507 -22.31103 -21.95421 -21.19077 -19.16544 -18.35480 -16.91303 -16.62156 -16.20801 -15.34621 -15.03848 -14.68731 -14.63569 -14.09458 -13.76520 -13.61353 -13.39635 -12.97245 -12.48629 -12.11544 -12.09699 -11.91313 -11.73291 -11.62353 -11.23915 -11.10342 -10.77541 -10.54844 -9.91554 -9.87988 -9.48610 -9.35105 -9.11541 -8.74810 -8.63194 -7.62587 -6.09063 -4.07934 0.72838 1.37029 1.84918 2.85827 3.25574 3.33400 3.34897 3.67292 3.93631 4.26990 4.38307 4.51939 4.62102 4.79020 4.90863 4.95970 5.20046 5.23556 5.26015 5.35314 5.39299 5.42509 5.50477 5.55591 5.79457 5.80659 5.96869 6.25731 6.66171 6.71501 6.91390 7.51160 7.77069 7.83062 8.18959 8.58631 8.99033 9.51687 11.04166 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.050941 B = 0.003310 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.525335 B = 8457.129846 C = 8639.636565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.080 0.920 9 C 0.165 3.835 10 N -0.675 5.675 11 C 0.127 3.873 12 C -0.190 4.190 13 C 0.026 3.974 14 N -0.448 5.448 15 C 0.015 3.985 16 C 0.164 3.836 17 H 0.091 0.909 18 C -0.142 4.142 19 C -0.154 4.154 20 C 0.050 3.950 21 O -0.360 6.360 22 S 0.156 5.844 23 H 0.265 0.735 24 H 0.028 0.972 25 H -0.017 1.017 26 H 0.340 0.660 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.174 0.826 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.308 -15.783 2.385 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.706 3.294 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.306 5.306 11 C -0.005 4.005 12 C -0.311 4.311 13 C -0.126 4.126 14 N -0.162 5.162 15 C -0.262 4.262 16 C 0.103 3.897 17 H 0.109 0.891 18 C -0.182 4.182 19 C -0.192 4.192 20 C -0.026 4.026 21 O -0.279 6.279 22 S 0.411 5.589 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.000 1.000 26 H 0.157 0.843 27 H 0.098 0.902 28 H 0.064 0.936 29 H 0.191 0.809 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.940 -15.964 3.682 25.807 hybrid contribution 0.526 1.515 -1.805 2.415 sum 20.466 -14.448 1.877 25.123 Atomic orbital electron populations 1.69896 1.06176 1.26965 1.50678 1.24908 0.94764 0.98955 0.94657 0.86812 0.80308 0.83818 0.78479 1.20289 1.21080 1.19152 1.21023 0.88739 0.94928 1.50936 0.90221 1.20046 0.96885 0.84376 0.94987 1.60599 1.02837 1.17172 1.50017 1.20332 0.91474 0.87253 1.01396 1.26133 1.07803 1.02619 0.94595 1.21716 1.02519 0.88222 1.00182 1.66128 1.14547 1.16876 1.18691 1.26733 1.06262 1.00750 0.92496 1.21275 0.91816 0.81952 0.94641 0.89113 1.23308 0.94617 0.96141 1.04087 1.23133 0.98501 0.95458 1.02111 1.23154 0.88811 0.89893 1.00782 1.88552 1.37399 1.26969 1.75001 1.83896 1.59879 1.04144 1.10995 0.92557 0.95366 0.99980 0.84254 0.90245 0.93610 0.80931 0.89447 0.89391 0.90240 0.89686 0.91146 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 7 C -0.52 -14.83 9.87 -34.44 -0.34 -15.17 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.16 3.94 4.51 -4.98 -0.02 3.92 16 10 N -0.67 -13.92 6.48 -116.34 -0.75 -14.67 16 11 C 0.13 2.09 6.22 -4.98 -0.03 2.06 16 12 C -0.19 -2.87 6.11 -35.92 -0.22 -3.09 16 13 C 0.03 0.38 11.25 -19.18 -0.22 0.16 16 14 N -0.45 -6.94 10.53 -11.87 -0.12 -7.06 16 15 C 0.02 0.21 6.33 -13.46 -0.09 0.12 16 16 C 0.16 1.82 3.96 -26.86 -0.11 1.71 16 17 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.14 -1.17 6.56 -24.48 -0.16 -1.33 16 19 C -0.15 -0.99 7.02 -24.78 -0.17 -1.16 16 20 C 0.05 0.44 7.79 37.88 0.30 0.73 16 21 O -0.36 -4.65 11.01 -35.23 -0.39 -5.04 16 22 S 0.16 2.10 23.18 -107.50 -2.49 -0.40 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 25 H -0.02 -0.41 7.57 -51.93 -0.39 -0.80 16 26 H 0.34 6.93 8.71 -39.29 -0.34 6.58 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -32.70 309.56 -9.07 -41.76 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.92 Total: 1.05 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.11 Total: -48.62 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.39 Total: -5.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.49 Total: -0.40 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.70 -9.07 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336665972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds