Wall clock time and date at job start Mon Mar 30 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86808 * 119.99823 * 2 1 4 4 H 1.48501 * 109.46802 * 269.99727 * 3 2 1 5 5 H 1.48498 * 109.46985 * 29.99671 * 3 2 1 6 6 H 1.48500 * 109.46961 * 149.99714 * 3 2 1 7 7 C 1.37879 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99963 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99879 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46899 * 111.00094 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46953 * 180.02562 * 11 10 9 13 13 C 1.33638 * 126.04034 * 89.97401 * 12 11 10 14 14 N 1.31783 * 114.50019 * 179.97438 * 13 12 11 15 15 C 1.29024 * 117.12778 * 0.02562 * 14 13 12 16 16 C 1.50695 * 124.92117 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.28058 * 194.38548 * 16 15 14 18 18 C 1.54951 * 110.30655 * 72.18975 * 16 15 14 19 19 C 1.55312 * 100.94225 * 204.64087 * 18 16 15 20 20 C 1.54380 * 102.25056 * 34.13333 * 19 18 16 21 21 O 1.43245 * 107.59000 * 338.64209 * 20 19 18 22 22 S 1.70978 * 110.16657 * 0.22351 * 15 14 13 23 23 H 0.96997 * 120.00236 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.46995 * 59.99851 * 9 7 2 25 25 H 1.09005 * 109.47084 * 300.00507 * 9 7 2 26 26 H 1.00905 * 110.99495 * 56.04342 * 10 9 7 27 27 H 1.08995 * 109.46804 * 60.00230 * 11 10 9 28 28 H 1.09002 * 109.46913 * 300.00366 * 11 10 9 29 29 H 1.07999 * 122.75387 * 359.97438 * 13 12 11 30 30 H 1.09000 * 111.12523 * 322.56117 * 18 16 15 31 31 H 1.09000 * 111.12500 * 86.68234 * 18 16 15 32 32 H 1.08999 * 110.84840 * 275.94257 * 19 18 16 33 33 H 1.08999 * 110.84966 * 152.32055 * 19 18 16 34 34 H 1.08996 * 109.83192 * 219.13077 * 20 19 18 35 35 H 1.09002 * 109.83458 * 98.15431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0013 -2.5789 0.0022 11 6 5.4698 -2.6181 0.0022 12 6 5.9340 -4.0518 0.0027 13 6 6.1758 -4.8004 -1.0776 14 7 6.5742 -6.0284 -0.8135 15 6 6.6815 -6.3577 0.4294 16 6 7.1198 -7.7102 0.9288 17 1 6.8874 -7.8152 1.9886 18 6 8.6376 -7.9068 0.6869 19 6 8.7303 -9.4565 0.6397 20 6 7.3874 -9.8452 -0.0152 21 8 6.4815 -8.7516 0.1729 22 16 6.2478 -5.0393 1.4280 23 1 -0.4850 0.8400 0.0004 24 1 3.8745 -0.6799 0.8911 25 1 3.8753 -0.6802 -0.8888 26 1 3.6260 -3.0957 -0.7790 27 1 5.8466 -2.1134 0.8918 28 1 5.8466 -2.1148 -0.8882 29 1 6.0546 -4.4294 -2.0846 30 1 8.9446 -7.4658 -0.2614 31 1 9.2227 -7.5026 1.5130 32 1 8.8063 -9.8713 1.6448 33 1 9.5698 -9.7762 0.0224 34 1 6.9894 -10.7411 0.4611 35 1 7.5337 -10.0251 -1.0802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336665972.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:28 Heat of formation + Delta-G solvation = -24.306902 kcal Electronic energy + Delta-G solvation = -17322.684306 eV Core-core repulsion = 14446.420466 eV Total energy + Delta-G solvation = -2876.263841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.09086 -39.90957 -37.35952 -34.73724 -33.25913 -32.66700 -30.85881 -28.71795 -26.58908 -24.83059 -23.34007 -23.03309 -22.56944 -20.24151 -19.45514 -18.90081 -17.49698 -17.08937 -16.75809 -16.23272 -16.12036 -15.78723 -15.56989 -15.10959 -14.59418 -14.42049 -14.34184 -14.10923 -13.60627 -13.34742 -12.82712 -12.72237 -12.65901 -12.38056 -12.25261 -12.19350 -11.81928 -11.79967 -11.52561 -10.83210 -10.73804 -10.54446 -10.24914 -9.84275 -9.23427 -8.31011 -6.36731 -0.37712 0.30140 0.74556 1.35625 1.38067 1.49174 1.75556 2.33867 2.87939 3.03064 3.09417 3.51131 3.59444 3.81319 3.90635 3.94463 4.12832 4.18170 4.29151 4.38661 4.54784 4.68727 4.78333 4.81163 4.84988 4.90362 4.99863 5.03108 5.13528 5.24804 5.49085 5.87024 5.97734 6.46180 6.55944 6.71739 6.74112 7.28098 8.86003 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.050941 B = 0.003310 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.525335 B = 8457.129846 C = 8639.636565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.245 1.245 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.176 3.824 10 N -0.688 5.688 11 C 0.133 3.867 12 C -0.213 4.213 13 C 0.026 3.974 14 N -0.478 5.478 15 C 0.019 3.981 16 C 0.153 3.847 17 H 0.110 0.890 18 C -0.138 4.138 19 C -0.142 4.142 20 C 0.040 3.960 21 O -0.396 6.396 22 S 0.179 5.821 23 H 0.268 0.732 24 H 0.032 0.968 25 H -0.006 1.006 26 H 0.337 0.663 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.184 0.816 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.052 -15.694 3.066 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.319 5.319 11 C 0.002 3.998 12 C -0.335 4.335 13 C -0.126 4.126 14 N -0.193 5.193 15 C -0.258 4.258 16 C 0.092 3.908 17 H 0.128 0.872 18 C -0.177 4.177 19 C -0.180 4.180 20 C -0.036 4.036 21 O -0.316 6.316 22 S 0.434 5.566 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.012 0.988 26 H 0.155 0.845 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.201 0.799 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 22.713 -15.900 4.371 28.068 hybrid contribution -0.362 1.300 -2.012 2.423 sum 22.350 -14.600 2.359 26.800 Atomic orbital electron populations 1.70063 1.08361 1.28349 1.52163 1.25940 0.95671 1.03537 0.93981 0.85600 0.79445 0.77903 0.79254 1.19033 1.20772 1.16824 1.21321 0.91473 0.93373 1.50811 0.94871 1.19787 0.93629 0.86450 0.95409 1.60468 1.05884 1.15278 1.50255 1.20296 0.88545 0.88460 1.02487 1.26007 1.09493 1.02415 0.95591 1.21946 1.01712 0.88148 1.00802 1.66194 1.16106 1.17231 1.19737 1.27354 1.04421 1.01865 0.92171 1.21642 0.93557 0.80387 0.95196 0.87216 1.23308 0.92673 0.97607 1.04113 1.23135 0.97578 0.93880 1.03397 1.23385 0.89741 0.89340 1.01145 1.88505 1.39369 1.28238 1.75489 1.83740 1.59263 1.03557 1.10005 0.92293 0.95004 0.98802 0.84520 0.89537 0.91991 0.79906 0.91117 0.87063 0.88152 0.88074 0.89697 0.91491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.96 43.49 27.47 68.60 1.88 45.37 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.55 16 7 C -0.53 -31.03 9.87 25.60 0.25 -30.78 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.18 8.23 4.51 85.56 0.39 8.61 16 10 N -0.69 -28.05 6.48 -521.99 -3.38 -31.43 16 11 C 0.13 4.16 6.22 85.56 0.53 4.69 16 12 C -0.21 -6.24 6.11 24.64 0.15 -6.09 16 13 C 0.03 0.76 11.25 83.66 0.94 1.70 16 14 N -0.48 -14.56 10.53 -191.45 -2.02 -16.58 16 15 C 0.02 0.51 6.33 88.52 0.56 1.07 16 16 C 0.15 3.16 3.96 30.51 0.12 3.28 16 17 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 18 C -0.14 -1.96 6.56 32.06 0.21 -1.75 16 19 C -0.14 -1.43 7.02 31.86 0.22 -1.21 16 20 C 0.04 0.63 7.79 72.45 0.56 1.20 16 21 O -0.40 -9.91 11.01 -148.98 -1.64 -11.55 16 22 S 0.18 4.58 23.18 -56.49 -1.31 3.27 16 23 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 25 H -0.01 -0.25 7.57 -2.38 -0.02 -0.27 16 26 H 0.34 13.90 8.71 -89.69 -0.78 13.11 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 30 H 0.07 1.26 8.05 -2.39 -0.02 1.24 16 31 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -71.94 309.56 -1.50 -73.44 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.26 Total: 15.46 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 4.40 Total: -18.44 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -5.10 Total: -107.54 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -1.64 Total: -11.55 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.31 Total: 3.27 kcal Total: -71.94 -1.50 -73.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336665972.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.133 kcal (2) G-P(sol) polarization free energy of solvation -71.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds