Wall clock time and date at job start Mon Mar 30 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47598 * 300.00363 * 3 2 1 6 6 H 1.48508 * 109.47208 * 60.00183 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.47333 * 180.02562 * 20 19 18 22 22 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 23 23 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 25 25 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 26 26 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 27 27 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 28 28 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 29 29 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 30 30 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 31 31 H 1.09005 * 109.47085 * 300.00414 * 20 19 18 32 32 H 1.09004 * 109.47248 * 59.99651 * 20 19 18 33 33 H 1.08004 * 120.07097 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.8673 -7.1806 0.1136 22 6 3.4348 -3.4274 -0.3479 23 1 -0.4850 0.8401 -0.0004 24 1 0.3932 -4.8050 0.1928 25 1 1.7209 -6.8641 -0.0249 26 1 4.1428 -6.7336 -0.4382 27 1 5.9218 -3.7978 -1.2403 28 1 8.0452 -4.7634 -1.0901 29 1 8.5776 -6.3730 1.1689 30 1 8.2537 -7.4414 -0.2175 31 1 10.0248 -6.2906 -1.5172 32 1 10.3482 -5.2225 -0.1305 33 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798009892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:05 Heat of formation + Delta-G solvation = -77.555211 kcal Electronic energy + Delta-G solvation = -19329.262989 eV Core-core repulsion = 15884.476952 eV Total energy + Delta-G solvation = -3444.786037 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.08380 -40.42602 -38.79647 -36.71880 -35.20495 -34.25931 -32.24925 -30.34449 -29.08704 -28.17476 -25.31742 -23.63669 -22.08787 -21.80576 -20.52191 -18.74347 -17.91436 -17.47332 -16.85664 -16.64910 -15.65041 -15.44579 -15.19103 -14.98476 -14.67068 -14.29026 -13.99872 -13.92373 -13.58129 -13.34509 -12.97621 -12.37792 -11.77936 -11.64514 -11.58982 -11.38634 -11.15991 -11.05387 -10.73504 -10.44562 -10.14823 -9.68005 -9.49265 -9.35901 -8.81686 -7.72484 -7.14753 -6.46018 -4.05679 2.03752 2.38066 2.50731 3.09459 3.10773 3.16438 3.23636 3.94351 4.05955 4.11282 4.32370 4.53631 4.60217 4.92186 5.09738 5.27606 5.30873 5.50252 5.69774 5.99378 6.06994 6.12260 6.23915 6.25245 6.51142 6.75015 6.99438 7.09256 7.23057 7.32737 7.42380 7.81712 7.92783 7.98749 8.53839 8.99549 9.70463 10.72208 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.003934 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.082325 B = 7116.458501 C = 8235.758665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.169 3.831 11 C -0.201 4.201 12 C -0.063 4.063 13 C -0.205 4.205 14 C 0.197 3.803 15 N -0.680 5.680 16 C 0.705 3.295 17 O -0.566 6.566 18 N -0.747 5.747 19 C 0.107 3.893 20 C 0.055 3.945 21 F -0.207 7.207 22 C -0.257 4.257 23 H 0.269 0.731 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.403 0.597 28 H 0.397 0.603 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.582 -7.490 -3.814 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.080 6.080 10 C 0.115 3.885 11 C -0.221 4.221 12 C -0.082 4.082 13 C -0.226 4.226 14 C 0.103 3.897 15 N -0.327 5.327 16 C 0.405 3.595 17 O -0.442 6.442 18 N -0.405 5.405 19 C -0.018 4.018 20 C -0.001 4.001 21 F -0.188 7.188 22 C -0.279 4.279 23 H 0.079 0.921 24 H 0.136 0.864 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.238 0.762 28 H 0.231 0.769 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.818 -8.108 -3.074 18.039 hybrid contribution 0.982 1.560 -0.545 1.923 sum 16.800 -6.548 -3.619 18.391 Atomic orbital electron populations 1.70047 1.05926 1.27522 1.46226 1.25274 0.95832 0.98782 0.96633 0.85662 0.79007 0.80519 0.78271 1.19251 1.20163 1.20143 1.21313 0.91676 0.80896 1.52897 0.89226 1.84022 1.33900 1.11372 1.78722 1.19064 0.89450 0.88107 0.91891 1.20254 1.00173 0.90000 1.11639 1.20531 0.93082 0.96951 0.97589 1.20562 0.94567 0.95919 1.11532 1.17173 0.79983 0.93956 0.98549 1.42552 1.05870 1.29675 1.54596 1.15811 0.80538 0.82374 0.80766 1.90973 1.75112 1.39434 1.38655 1.44804 1.07161 1.35260 1.53279 1.21669 0.87565 0.92750 0.99813 1.22042 0.87866 0.90991 0.99155 1.92801 1.71622 1.66265 1.88158 1.20776 0.94803 0.97128 1.15236 0.92071 0.86364 0.86596 0.86259 0.76242 0.76875 0.90268 0.90260 0.90028 0.90005 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.07 13.67 55.48 0.76 -24.31 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.78 9.44 30.88 0.29 -10.48 16 8 H 0.09 2.27 5.30 -52.49 -0.28 2.00 16 9 O -0.18 -5.00 9.76 0.03 0.00 -5.00 16 10 C 0.17 4.08 6.64 -39.14 -0.26 3.82 16 11 C -0.20 -4.31 9.99 -39.36 -0.39 -4.70 16 12 C -0.06 -1.19 10.03 -39.63 -0.40 -1.58 16 13 C -0.20 -3.95 8.65 -39.34 -0.34 -4.29 16 14 C 0.20 3.75 6.27 -83.71 -0.52 3.23 16 15 N -0.68 -9.98 5.35 -14.24 -0.08 -10.06 16 16 C 0.70 10.30 8.30 -86.92 -0.72 9.58 16 17 O -0.57 -10.68 14.05 5.29 0.07 -10.60 16 18 N -0.75 -7.02 5.56 -65.23 -0.36 -7.38 16 19 C 0.11 0.93 6.13 -4.05 -0.02 0.90 16 20 C 0.05 0.32 7.67 37.16 0.28 0.60 16 21 F -0.21 -1.82 17.36 2.25 0.04 -1.78 16 22 C -0.26 -5.53 9.04 -39.21 -0.35 -5.88 16 23 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 25 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 26 H 0.12 2.27 6.43 -52.49 -0.34 1.93 16 27 H 0.40 4.46 8.83 -40.82 -0.36 4.10 16 28 H 0.40 2.31 8.49 -40.82 -0.35 1.96 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.13 2.71 5.71 -52.48 -0.30 2.41 16 LS Contribution 296.04 15.07 4.46 4.46 Total: -1.00 -34.17 296.04 -5.96 -40.13 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -3.29 Total: 7.28 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.54 Total: -7.86 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.32 Total: -41.75 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.07 Total: -15.60 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.17 -5.96 -40.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798009892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.425 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds