Wall clock time and date at job start Mon Mar 30 2020 01:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47598 * 300.00363 * 3 2 1 6 6 H 1.48508 * 109.47208 * 60.00183 * 3 2 1 7 7 C 1.38649 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.35752 * 117.00023 * 174.59893 * 9 7 2 11 11 C 1.38954 * 120.02912 * 173.82368 * 10 9 7 12 12 C 1.38126 * 120.06511 * 179.71502 * 11 10 9 13 13 C 1.38206 * 120.13712 * 0.55675 * 12 11 10 14 14 C 1.38918 * 120.06796 * 359.71621 * 13 12 11 15 15 N 1.39948 * 120.03534 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00173 * 326.33923 * 15 14 13 17 17 O 1.21591 * 119.99993 * 354.73754 * 16 15 14 18 18 N 1.34780 * 120.00018 * 174.73011 * 16 15 14 19 19 C 1.46493 * 119.99752 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47038 * 180.02562 * 19 18 16 21 21 F 1.39902 * 109.47333 * 180.02562 * 20 19 18 22 22 C 1.38729 * 120.03317 * 354.08934 * 10 9 7 23 23 H 0.97008 * 119.99966 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.96618 * 359.96966 * 11 10 9 25 25 H 1.08001 * 119.93332 * 180.27252 * 12 11 10 26 26 H 1.08001 * 119.96758 * 179.74148 * 13 12 11 27 27 H 0.97003 * 119.99302 * 146.33699 * 15 14 13 28 28 H 0.97003 * 119.99703 * 0.02562 * 18 16 15 29 29 H 1.09005 * 109.47586 * 299.99949 * 19 18 16 30 30 H 1.08997 * 109.47586 * 60.00395 * 19 18 16 31 31 H 1.09005 * 109.47085 * 300.00414 * 20 19 18 32 32 H 1.09004 * 109.47248 * 59.99651 * 20 19 18 33 33 H 1.08004 * 120.07097 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0694 -3.5042 -0.1149 11 6 1.4553 -4.7448 0.0067 12 6 2.2011 -5.9010 -0.1154 13 6 3.5616 -5.8279 -0.3474 14 6 4.1822 -4.5906 -0.4643 15 7 5.5598 -4.5173 -0.6997 16 6 6.3834 -5.4464 -0.1754 17 8 5.9437 -6.2921 0.5796 18 7 7.6944 -5.4383 -0.4880 19 6 8.5895 -6.4485 0.0815 20 6 10.0126 -6.2155 -0.4298 21 9 10.8673 -7.1806 0.1136 22 6 3.4348 -3.4274 -0.3479 23 1 -0.4850 0.8401 -0.0004 24 1 0.3932 -4.8050 0.1928 25 1 1.7209 -6.8641 -0.0249 26 1 4.1428 -6.7336 -0.4382 27 1 5.9218 -3.7978 -1.2403 28 1 8.0452 -4.7634 -1.0901 29 1 8.5776 -6.3730 1.1689 30 1 8.2537 -7.4414 -0.2175 31 1 10.0248 -6.2906 -1.5172 32 1 10.3482 -5.2225 -0.1305 33 1 3.9149 -2.4643 -0.4389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798009892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:05 Heat of formation + Delta-G solvation = -102.658008 kcal Electronic energy + Delta-G solvation = -19330.351528 eV Core-core repulsion = 15884.476952 eV Total energy + Delta-G solvation = -3445.874575 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.66682 -41.71792 -40.46578 -38.32705 -36.25321 -35.67678 -34.21651 -31.46114 -30.63528 -29.53793 -27.27810 -24.51548 -23.49283 -23.23573 -21.88878 -20.17352 -19.44255 -19.08972 -17.68187 -17.48117 -16.86629 -16.83864 -16.44975 -16.12102 -15.97688 -15.78245 -15.55668 -15.40157 -14.78712 -14.57136 -14.37596 -14.05392 -13.54468 -13.24972 -12.77858 -12.71195 -12.38105 -12.21651 -12.07233 -11.89817 -11.58625 -11.31416 -11.18071 -10.72763 -10.29137 -9.32452 -8.83801 -8.45174 -6.13889 0.45269 0.71845 1.37243 1.42356 1.46376 1.55499 1.99938 2.19067 2.85982 3.05748 3.19365 3.51172 3.53303 3.87288 4.11327 4.14547 4.34476 4.35688 4.46175 4.63747 4.67112 4.72409 4.86343 5.04060 5.12763 5.27571 5.35152 5.48211 5.68723 5.69937 5.91956 6.03354 6.21405 6.90176 6.99424 7.39478 7.79459 8.78198 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.003934 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.082325 B = 7116.458501 C = 8235.758665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.248 1.248 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.227 6.227 10 C 0.135 3.865 11 C -0.215 4.215 12 C -0.051 4.051 13 C -0.200 4.200 14 C 0.205 3.795 15 N -0.671 5.671 16 C 0.703 3.297 17 O -0.610 6.610 18 N -0.721 5.721 19 C 0.106 3.894 20 C 0.061 3.939 21 F -0.224 7.224 22 C -0.260 4.260 23 H 0.272 0.728 24 H 0.119 0.881 25 H 0.153 0.847 26 H 0.129 0.871 27 H 0.422 0.578 28 H 0.419 0.581 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.605 -7.701 -4.616 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.133 6.133 10 C 0.084 3.916 11 C -0.235 4.235 12 C -0.070 4.070 13 C -0.221 4.221 14 C 0.110 3.890 15 N -0.319 5.319 16 C 0.403 3.597 17 O -0.489 6.489 18 N -0.379 5.379 19 C -0.019 4.019 20 C 0.006 3.994 21 F -0.205 7.205 22 C -0.282 4.282 23 H 0.081 0.919 24 H 0.137 0.863 25 H 0.171 0.829 26 H 0.147 0.853 27 H 0.260 0.740 28 H 0.257 0.743 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.939 -8.340 -3.919 21.062 hybrid contribution 0.174 1.332 -0.307 1.378 sum 19.114 -7.008 -4.226 20.792 Atomic orbital electron populations 1.70195 1.08090 1.28744 1.48829 1.26592 0.96826 1.02763 0.95858 0.84522 0.78380 0.74811 0.78430 1.17135 1.19320 1.19745 1.21843 0.92515 0.81336 1.53108 0.87936 1.83989 1.35564 1.12516 1.81241 1.19581 0.90789 0.87951 0.93269 1.20478 1.00686 0.90092 1.12254 1.20910 0.92975 0.97577 0.95527 1.20864 0.94812 0.96358 1.10057 1.17166 0.81906 0.93024 0.96922 1.42372 1.04261 1.30550 1.54730 1.15970 0.81830 0.81620 0.80295 1.90947 1.76293 1.41059 1.40620 1.44540 1.05256 1.35545 1.52554 1.21740 0.89131 0.91976 0.99101 1.22143 0.85378 0.91451 1.00436 1.92772 1.71960 1.67216 1.88587 1.20797 0.94039 0.98109 1.15229 0.91854 0.86301 0.82928 0.85303 0.74012 0.74309 0.91750 0.91292 0.87429 0.87684 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.67 21.61 0.30 -55.42 16 2 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 3 Si 1.02 41.48 29.55 68.60 2.03 43.51 16 4 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.41 -23.36 9.44 67.92 0.64 -22.72 16 8 H 0.10 5.27 5.30 -2.91 -0.02 5.25 16 9 O -0.23 -13.44 9.76 -22.80 -0.22 -13.66 16 10 C 0.14 6.70 6.64 22.56 0.15 6.85 16 11 C -0.22 -9.32 9.99 22.41 0.22 -9.10 16 12 C -0.05 -1.86 10.03 22.24 0.22 -1.64 16 13 C -0.20 -7.33 8.65 22.43 0.19 -7.14 16 14 C 0.21 7.50 6.27 38.13 0.24 7.74 16 15 N -0.67 -18.02 5.35 -317.22 -1.70 -19.72 16 16 C 0.70 18.81 8.30 179.05 1.49 20.30 16 17 O -0.61 -21.99 14.05 -4.00 -0.06 -22.05 16 18 N -0.72 -11.26 5.56 -478.54 -2.66 -13.92 16 19 C 0.11 1.57 6.13 86.38 0.53 2.10 16 20 C 0.06 0.50 7.67 71.98 0.55 1.05 16 21 F -0.22 -3.42 17.36 44.97 0.78 -2.64 16 22 C -0.26 -11.10 9.04 22.51 0.20 -10.90 16 23 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 24 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 25 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 26 H 0.13 4.59 6.43 -2.91 -0.02 4.57 16 27 H 0.42 8.06 8.83 -92.71 -0.82 7.24 16 28 H 0.42 3.10 8.49 -92.71 -0.79 2.31 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.13 5.43 5.71 -2.91 -0.02 5.42 16 Total: -1.00 -77.85 296.04 2.94 -74.91 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.43 Total: 23.26 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.91 Total: -14.28 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -4.06 Total: -89.06 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.28 Total: -35.71 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -77.85 2.94 -74.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798009892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.747 kcal (2) G-P(sol) polarization free energy of solvation -77.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds