Wall clock time and date at job start Mon Mar 30 2020 01:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99913 * 3 2 1 5 5 H 1.48498 * 109.47121 * 30.00010 * 3 2 1 6 6 H 1.48505 * 109.46998 * 149.99910 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99622 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99622 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 15 13 18 18 C 1.35133 * 127.25000 * 89.70713 * 17 16 15 19 19 C 1.37811 * 114.76118 * 179.86903 * 18 17 16 20 20 N 1.30078 * 116.88114 * 0.44083 * 19 18 17 21 21 S 1.69604 * 107.15012 * 359.76528 * 20 19 18 22 22 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 26 26 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99559 * 11 10 9 28 28 H 1.09002 * 109.46935 * 299.99901 * 11 10 9 29 29 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 30 30 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 31 31 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 32 32 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 33 33 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 34 34 H 1.08005 * 122.62203 * 0.03677 * 18 17 16 35 35 H 1.08005 * 121.55893 * 180.21071 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 6 1.7213 -7.4551 -0.0008 14 8 0.5085 -7.4551 0.0002 15 7 2.3953 -8.6222 -0.0008 16 6 1.6628 -9.8910 -0.0002 17 6 2.6422 -11.0364 -0.0009 18 6 3.1787 -11.6545 1.0743 19 6 4.0496 -12.6800 0.7756 20 7 4.2588 -12.9256 -0.4845 21 16 3.3183 -11.8275 -1.3710 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8903 25 1 2.8722 -3.6042 0.8904 26 1 2.8720 -3.6042 -0.8895 27 1 0.8541 -5.0445 -0.8903 28 1 0.8536 -5.0451 0.8897 29 1 3.1015 -6.0926 0.8892 30 1 3.1014 -6.0917 -0.8908 31 1 3.3652 -8.6222 -0.0011 32 1 1.0365 -9.9485 0.8901 33 1 1.0358 -9.9490 -0.8899 34 1 2.9415 -11.3690 2.0885 35 1 4.5384 -13.2505 1.5515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862408634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:45 Heat of formation + Delta-G solvation = -22.831834 kcal Electronic energy + Delta-G solvation = -16726.240710 eV Core-core repulsion = 13850.040833 eV Total energy + Delta-G solvation = -2876.199877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.91823 -39.13019 -35.54336 -34.80801 -32.67393 -31.94840 -29.81349 -27.60262 -25.52108 -24.05789 -22.26831 -20.59643 -20.28560 -19.97771 -18.38919 -16.98500 -16.45768 -16.08910 -15.85025 -15.66551 -14.59451 -14.49733 -14.40426 -13.75073 -13.71785 -13.30255 -13.03368 -12.60631 -12.18230 -11.70886 -11.62469 -11.58045 -10.98467 -10.93234 -10.54895 -10.50979 -10.42004 -10.37228 -9.78430 -9.61875 -9.36303 -9.22427 -9.21214 -8.98152 -8.30282 -5.95021 -3.97565 0.10994 0.97794 1.39973 1.94314 2.62773 3.09936 3.34205 3.40269 3.43385 3.91567 4.48588 4.49696 4.67663 4.83242 4.92482 5.22686 5.30429 5.31376 5.34721 5.40314 5.41256 5.82804 6.06654 6.09869 6.12698 6.29079 6.53675 6.83240 7.01040 7.19268 7.28906 7.74292 7.90177 8.06288 8.13919 8.48103 9.10177 9.66119 11.16285 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.055361 B = 0.002406 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.645589 B =11632.998794 C =11818.279132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.138 4.138 13 C 0.515 3.485 14 O -0.531 6.531 15 N -0.737 5.737 16 C 0.196 3.804 17 C -0.191 4.191 18 C -0.186 4.186 19 C 0.087 3.913 20 N -0.458 5.458 21 S 0.275 5.725 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.206 -25.962 1.199 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.142 4.142 12 C -0.178 4.178 13 C 0.303 3.697 14 O -0.407 6.407 15 N -0.392 5.392 16 C 0.070 3.930 17 C -0.322 4.322 18 C -0.222 4.222 19 C -0.110 4.110 20 N -0.278 5.278 21 S 0.427 5.573 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.236 0.764 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.178 0.822 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.727 -26.525 -0.836 27.640 hybrid contribution 0.594 1.238 1.911 2.353 sum 8.321 -25.287 1.075 26.642 Atomic orbital electron populations 1.69973 1.06046 1.26509 1.50946 1.25042 0.94844 0.99235 0.95473 0.86612 0.79819 0.83603 0.78050 1.20708 1.21260 1.19931 1.21281 0.92976 0.91203 1.50384 0.92763 1.19100 0.94063 0.91273 0.97324 1.21652 0.99083 0.93970 1.00093 1.21465 0.97011 0.92678 1.03022 1.21805 1.00134 0.91657 1.04159 1.21166 0.88464 0.85331 0.74781 1.90725 1.14166 1.87524 1.48236 1.46159 1.10420 1.04839 1.77752 1.19526 0.90730 0.78488 1.04228 1.25556 1.04088 1.03451 0.99082 1.21464 1.00670 0.98427 1.01677 1.22894 0.97186 0.96916 0.93981 1.76818 1.21593 1.21167 1.08266 1.84306 1.35117 1.24110 1.13793 0.93042 0.96588 0.96574 0.93461 0.93459 0.91742 0.91749 0.89003 0.88977 0.76361 0.89148 0.89727 0.82210 0.79711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.14 -1.72 5.70 -27.88 -0.16 -1.88 16 13 C 0.51 6.62 7.83 -10.99 -0.09 6.53 16 14 O -0.53 -9.10 15.98 5.56 0.09 -9.01 16 15 N -0.74 -6.64 5.55 -61.47 -0.34 -6.98 16 16 C 0.20 1.61 6.25 -5.19 -0.03 1.57 16 17 C -0.19 -1.34 5.96 -35.41 -0.21 -1.55 16 18 C -0.19 -1.10 10.17 -40.84 -0.42 -1.51 16 19 C 0.09 0.54 11.27 -18.45 -0.21 0.34 16 20 N -0.46 -4.00 12.09 28.86 0.35 -3.65 16 21 S 0.27 2.13 23.72 -107.50 -2.55 -0.42 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 28 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.40 2.70 8.46 -40.82 -0.35 2.36 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.16 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.19 0.58 8.06 -52.48 -0.42 0.16 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -34.26 319.83 -8.79 -43.05 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.96 Total: -3.73 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.92 Total: -14.19 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.74 Total: -37.38 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.55 Total: -0.42 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.26 -8.79 -43.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862408634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.223 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds