Wall clock time and date at job start Mon Mar 30 2020 01:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99913 * 3 2 1 5 5 H 1.48498 * 109.47121 * 30.00010 * 3 2 1 6 6 H 1.48505 * 109.46998 * 149.99910 * 3 2 1 7 7 C 1.37871 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00708 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47197 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47452 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99622 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99622 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 15 13 18 18 C 1.35133 * 127.25000 * 89.70713 * 17 16 15 19 19 C 1.37811 * 114.76118 * 179.86903 * 18 17 16 20 20 N 1.30078 * 116.88114 * 0.44083 * 19 18 17 21 21 S 1.69604 * 107.15012 * 359.76528 * 20 19 18 22 22 H 0.97002 * 120.00201 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.08998 * 109.47844 * 59.99593 * 10 9 7 26 26 H 1.09002 * 109.46838 * 299.99323 * 10 9 7 27 27 H 1.09001 * 109.46812 * 59.99559 * 11 10 9 28 28 H 1.09002 * 109.46935 * 299.99901 * 11 10 9 29 29 H 1.09001 * 109.46832 * 59.99801 * 12 11 10 30 30 H 1.09002 * 109.47153 * 299.99992 * 12 11 10 31 31 H 0.96996 * 120.00772 * 359.97438 * 15 13 12 32 32 H 1.09002 * 109.47068 * 299.99729 * 16 15 13 33 33 H 1.09001 * 109.47372 * 59.99816 * 16 15 13 34 34 H 1.08005 * 122.62203 * 0.03677 * 18 17 16 35 35 H 1.08005 * 121.55893 * 180.21071 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6619 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4748 -6.1499 -0.0008 13 6 1.7213 -7.4551 -0.0008 14 8 0.5085 -7.4551 0.0002 15 7 2.3953 -8.6222 -0.0008 16 6 1.6628 -9.8910 -0.0002 17 6 2.6422 -11.0364 -0.0009 18 6 3.1787 -11.6545 1.0743 19 6 4.0496 -12.6800 0.7756 20 7 4.2588 -12.9256 -0.4845 21 16 3.3183 -11.8275 -1.3710 22 1 -0.4850 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5566 0.8903 25 1 2.8722 -3.6042 0.8904 26 1 2.8720 -3.6042 -0.8895 27 1 0.8541 -5.0445 -0.8903 28 1 0.8536 -5.0451 0.8897 29 1 3.1015 -6.0926 0.8892 30 1 3.1014 -6.0917 -0.8908 31 1 3.3652 -8.6222 -0.0011 32 1 1.0365 -9.9485 0.8901 33 1 1.0358 -9.9490 -0.8899 34 1 2.9415 -11.3690 2.0885 35 1 4.5384 -13.2505 1.5515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862408634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:44 Heat of formation + Delta-G solvation = -46.024513 kcal Electronic energy + Delta-G solvation = -16727.246420 eV Core-core repulsion = 13850.040833 eV Total energy + Delta-G solvation = -2877.205587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86519 -39.73114 -36.75768 -36.13120 -34.59740 -32.75817 -31.37483 -28.55749 -27.06461 -24.87153 -23.81147 -21.79931 -21.39018 -20.90253 -19.02874 -18.40871 -17.86494 -17.17503 -16.93527 -16.51002 -16.23430 -15.75951 -15.08627 -14.75066 -14.63380 -14.51809 -13.99140 -13.77271 -13.57462 -13.50260 -13.23411 -12.80901 -12.33378 -12.20109 -12.13598 -12.10114 -11.46145 -11.36326 -11.35191 -11.21500 -11.01582 -10.53832 -10.52332 -10.20824 -9.75465 -8.17656 -6.29662 -0.42471 0.43063 0.87281 1.41205 1.43344 1.46675 1.54376 1.63162 2.27452 2.43060 3.15081 3.34483 3.83637 3.98914 4.08942 4.18152 4.23407 4.39926 4.55263 4.71223 4.71357 4.85442 4.87735 4.90733 4.93615 5.22165 5.27287 5.35327 5.42227 5.59195 5.59859 5.80448 5.89980 6.26812 6.47531 6.89065 7.21520 7.39948 8.94527 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.055361 B = 0.002406 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.645589 B =11632.998794 C =11818.279132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.097 4.097 12 C -0.128 4.128 13 C 0.517 3.483 14 O -0.582 6.582 15 N -0.717 5.717 16 C 0.198 3.802 17 C -0.192 4.192 18 C -0.175 4.175 19 C 0.093 3.907 20 N -0.487 5.487 21 S 0.249 5.751 22 H 0.263 0.737 23 H -0.016 1.016 24 H -0.015 1.015 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.417 0.583 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.184 0.816 35 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.778 -26.519 2.049 28.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.019 4.019 10 C -0.134 4.134 11 C -0.135 4.135 12 C -0.168 4.168 13 C 0.305 3.695 14 O -0.462 6.462 15 N -0.371 5.371 16 C 0.072 3.928 17 C -0.322 4.322 18 C -0.211 4.211 19 C -0.104 4.104 20 N -0.308 5.308 21 S 0.402 5.598 22 H 0.071 0.929 23 H 0.003 0.997 24 H 0.004 0.996 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.254 0.746 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.201 0.799 35 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 10.357 -27.121 0.003 29.031 hybrid contribution -0.227 1.339 1.692 2.170 sum 10.130 -25.782 1.695 27.753 Atomic orbital electron populations 1.70129 1.08044 1.27726 1.51942 1.26088 0.95786 1.03723 0.94851 0.85392 0.78686 0.78123 0.78497 1.19760 1.20973 1.18316 1.21760 0.93737 0.92257 1.50128 0.91604 1.19067 0.94725 0.93800 0.94342 1.21450 0.97806 0.92797 1.01308 1.21256 0.97519 0.93562 1.01168 1.21678 0.98959 0.89300 1.06826 1.21154 0.87730 0.86353 0.74253 1.90718 1.16291 1.88222 1.50954 1.45938 1.11135 1.04190 1.75843 1.19486 0.90924 0.78331 1.04012 1.25374 1.04323 1.03379 0.99170 1.21741 0.99488 0.97505 1.02373 1.23432 0.96468 0.96617 0.93869 1.76863 1.22521 1.21935 1.09469 1.84359 1.35916 1.24885 1.14656 0.92870 0.99730 0.99633 0.92039 0.92145 0.93811 0.93661 0.86154 0.86367 0.74620 0.88973 0.90501 0.79902 0.76633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.93 13.29 21.44 0.28 -58.64 16 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 0.97 4.97 29.85 0.15 1.12 16 10 C -0.10 -3.84 5.15 30.60 0.16 -3.69 16 11 C -0.10 -3.37 4.50 30.60 0.14 -3.23 16 12 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 13 C 0.52 12.62 7.83 87.66 0.69 13.31 16 14 O -0.58 -20.12 15.98 -3.03 -0.05 -20.17 16 15 N -0.72 -11.45 5.55 -466.78 -2.59 -14.04 16 16 C 0.20 2.98 6.25 85.63 0.53 3.52 16 17 C -0.19 -2.35 5.96 24.97 0.15 -2.20 16 18 C -0.17 -1.56 10.17 21.45 0.22 -1.35 16 19 C 0.09 0.91 11.27 84.85 0.96 1.87 16 20 N -0.49 -7.79 12.09 -62.61 -0.76 -8.54 16 21 S 0.25 3.66 23.72 -56.49 -1.34 2.32 16 22 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 23 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 28 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 29 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.42 4.34 8.46 -92.71 -0.78 3.56 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.18 0.79 8.06 -2.91 -0.02 0.76 16 35 H 0.22 0.59 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -76.56 319.83 1.73 -74.82 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: 0.30 Total: 1.91 kcal Atomic # 6 Polarization: -28.22 SS G_CDS: 3.85 Total: -24.37 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.06 Total: -81.22 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.34 Total: 2.32 kcal Total: -76.56 1.73 -74.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862408634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.800 kcal (2) G-P(sol) polarization free energy of solvation -76.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds